Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 BX005266.1-201ENST00000473402 457 ntBASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 AC122714.2-201ENST00000502787 707 ntBASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 AP005117.1-201ENST00000584346 1413 ntBASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 AL049757.1-201ENST00000616842 1596 ntBASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 PAN3-AS1-201ENST00000563843 1351 ntBASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 AC002310.6-201ENST00000624451 1377 ntBASIC15.75■□□□□ 0.11
PPP4R4Q6NUP7 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 GGT4P-201ENST00000623672 1708 ntBASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 CTNS-203ENST00000399306 803 ntTSL 3 BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 AC009078.2-202ENST00000463353 338 ntBASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 AL355877.3-201ENST00000622820 899 ntBASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
PPP4R4Q6NUP7 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 SOD2-201ENST00000337404 991 ntTSL 2 BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms