Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 AC087499.6-201ENST00000411576 835 ntBASIC15.73■□□□□ 0.11
COL28A1Q2UY09 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 DFFBP1-201ENST00000433250 979 ntBASIC15.73■□□□□ 0.11
COL28A1Q2UY09 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 PRR29-204ENST00000577953 565 ntTSL 4 BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 AC018529.1-201ENST00000613063 361 ntBASIC15.73■□□□□ 0.11
COL28A1Q2UY09 WASH6P-202ENST00000359512 1437 ntBASIC15.73■□□□□ 0.11
COL28A1Q2UY09 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL28A1Q2UY09 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 EGFEM1P-202ENST00000431685 1563 ntBASIC15.72■□□□□ 0.11
COL28A1Q2UY09 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 ELK2AP-201ENST00000392510 1007 ntBASIC15.72■□□□□ 0.11
COL28A1Q2UY09 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 HLA-V-204ENST00000476601 1289 ntBASIC15.72■□□□□ 0.11
COL28A1Q2UY09 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC15.72■□□□□ 0.11
COL28A1Q2UY09 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.71■□□□□ 0.11
COL28A1Q2UY09 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL28A1Q2UY09 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms