Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
PRKDCP78527 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC11.52□□□□□ -0.57
PRKDCP78527 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
PRKDCP78527 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
PRKDCP78527 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
PRKDCP78527 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
PRKDCP78527 AC026316.1-201ENST00000398900 414 ntBASIC11.52□□□□□ -0.57
PRKDCP78527 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC11.52□□□□□ -0.57
PRKDCP78527 PDIA3P2-201ENST00000428073 158 ntBASIC11.52□□□□□ -0.57
PRKDCP78527 FAU-202ENST00000434372 533 ntTSL 2 BASIC11.52□□□□□ -0.57
PRKDCP78527 NEU3-205ENST00000531619 582 ntTSL 5 BASIC11.52□□□□□ -0.57
PRKDCP78527 AC015910.1-201ENST00000579400 975 ntBASIC11.52□□□□□ -0.57
PRKDCP78527 RN7SL713P-201ENST00000582127 302 ntBASIC11.52□□□□□ -0.57
PRKDCP78527 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
PRKDCP78527 AL805961.1-201ENST00000642026 753 ntBASIC11.52□□□□□ -0.57
PRKDCP78527 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
PRKDCP78527 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC11.52□□□□□ -0.57
PRKDCP78527 KRT8P35-201ENST00000483942 1338 ntBASIC11.52□□□□□ -0.57
PRKDCP78527 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
PRKDCP78527 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
PRKDCP78527 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
PRKDCP78527 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
PRKDCP78527 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
PRKDCP78527 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
PRKDCP78527 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
PRKDCP78527 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC11.51□□□□□ -0.57
PRKDCP78527 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
PRKDCP78527 AC012618.1-201ENST00000461223 412 ntBASIC11.51□□□□□ -0.57
PRKDCP78527 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC11.51□□□□□ -0.57
PRKDCP78527 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC11.51□□□□□ -0.57
PRKDCP78527 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC11.51□□□□□ -0.57
PRKDCP78527 AC000095.1-201ENST00000603208 874 ntBASIC11.51□□□□□ -0.57
PRKDCP78527 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC11.51□□□□□ -0.57
PRKDCP78527 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
PRKDCP78527 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
PRKDCP78527 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
PRKDCP78527 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC11.51□□□□□ -0.57
PRKDCP78527 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC11.51□□□□□ -0.57
PRKDCP78527 BX539320.1-201ENST00000623759 877 ntBASIC11.51□□□□□ -0.57
PRKDCP78527 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
PRKDCP78527 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
PRKDCP78527 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC11.51□□□□□ -0.57
PRKDCP78527 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
PRKDCP78527 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
PRKDCP78527 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
PRKDCP78527 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
PRKDCP78527 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
PRKDCP78527 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
PRKDCP78527 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
PRKDCP78527 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC11.51□□□□□ -0.57
PRKDCP78527 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC11.51□□□□□ -0.57
PRKDCP78527 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
PRKDCP78527 AC106794.1-201ENST00000506935 792 ntBASIC11.51□□□□□ -0.57
PRKDCP78527 NSD1-211ENST00000511258 809 ntTSL 3 BASIC11.51□□□□□ -0.57
PRKDCP78527 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC11.51□□□□□ -0.57
PRKDCP78527 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
PRKDCP78527 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
PRKDCP78527 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
PRKDCP78527 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC11.5□□□□□ -0.57
PRKDCP78527 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC11.5□□□□□ -0.57
PRKDCP78527 AL161670.2-201ENST00000557650 1227 ntBASIC11.5□□□□□ -0.57
PRKDCP78527 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
PRKDCP78527 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC11.5□□□□□ -0.57
PRKDCP78527 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC11.5□□□□□ -0.57
PRKDCP78527 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
PRKDCP78527 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
PRKDCP78527 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
PRKDCP78527 SCARNA21-201ENST00000517026 139 ntBASIC11.5□□□□□ -0.57
PRKDCP78527 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC11.5□□□□□ -0.57
PRKDCP78527 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
PRKDCP78527 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC11.5□□□□□ -0.57
PRKDCP78527 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC11.5□□□□□ -0.57
PRKDCP78527 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
PRKDCP78527 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
PRKDCP78527 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
PRKDCP78527 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC11.5□□□□□ -0.57
PRKDCP78527 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
PRKDCP78527 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
PRKDCP78527 AC092068.3-201ENST00000587894 2016 ntBASIC11.5□□□□□ -0.57
PRKDCP78527 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
PRKDCP78527 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
PRKDCP78527 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC11.5□□□□□ -0.57
PRKDCP78527 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
PRKDCP78527 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC11.5□□□□□ -0.57
PRKDCP78527 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC11.5□□□□□ -0.57
PRKDCP78527 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC11.5□□□□□ -0.57
PRKDCP78527 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC11.5□□□□□ -0.57
PRKDCP78527 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
PRKDCP78527 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
PRKDCP78527 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC11.5□□□□□ -0.57
PRKDCP78527 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
PRKDCP78527 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC11.5□□□□□ -0.57
PRKDCP78527 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
PRKDCP78527 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC11.5□□□□□ -0.57
PRKDCP78527 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
PRKDCP78527 AL512652.2-201ENST00000625156 1716 ntBASIC11.5□□□□□ -0.57
PRKDCP78527 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
PRKDCP78527 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC11.5□□□□□ -0.57
PRKDCP78527 AL157792.1-201ENST00000488281 530 ntBASIC11.5□□□□□ -0.57
PRKDCP78527 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC11.5□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms