Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDH6P55285 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CDH6P55285 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.03■□□□□ 0.32
CDH6P55285 AC093724.1-201ENST00000448659 1027 ntBASIC17.03■□□□□ 0.32
CDH6P55285 AL161645.1-201ENST00000622716 1255 ntBASIC17.03■□□□□ 0.32
CDH6P55285 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.03■□□□□ 0.32
CDH6P55285 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.03■□□□□ 0.32
CDH6P55285 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.03■□□□□ 0.32
CDH6P55285 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDH6P55285 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC17.03■□□□□ 0.32
CDH6P55285 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.03■□□□□ 0.32
CDH6P55285 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDH6P55285 AL365203.3-201ENST00000609742 2057 ntBASIC17.03■□□□□ 0.32
CDH6P55285 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDH6P55285 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC17.03■□□□□ 0.32
CDH6P55285 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDH6P55285 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
CDH6P55285 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC17.03■□□□□ 0.32
CDH6P55285 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CDH6P55285 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
CDH6P55285 RELA-227ENST00000615805 2236 ntTSL 5 BASIC17.02■□□□□ 0.32
CDH6P55285 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
CDH6P55285 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC17.02■□□□□ 0.32
CDH6P55285 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
CDH6P55285 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
CDH6P55285 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CDH6P55285 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
CDH6P55285 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
CDH6P55285 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC17.02■□□□□ 0.32
CDH6P55285 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.02■□□□□ 0.32
CDH6P55285 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.02■□□□□ 0.32
CDH6P55285 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CDH6P55285 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC17.02■□□□□ 0.32
CDH6P55285 AC022188.1-201ENST00000620960 1664 ntBASIC17.02■□□□□ 0.32
CDH6P55285 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CDH6P55285 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CDH6P55285 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CDH6P55285 AC002056.1-201ENST00000395613 760 ntBASIC17.02■□□□□ 0.32
CDH6P55285 MIR940-201ENST00000401276 94 ntBASIC17.02■□□□□ 0.32
CDH6P55285 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CDH6P55285 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC17.02■□□□□ 0.32
CDH6P55285 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CDH6P55285 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CDH6P55285 AC010491.1-201ENST00000563101 2797 ntBASIC17.02■□□□□ 0.31
CDH6P55285 WASH6P-202ENST00000359512 1437 ntBASIC17.02■□□□□ 0.31
CDH6P55285 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
CDH6P55285 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.02■□□□□ 0.31
CDH6P55285 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CDH6P55285 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CDH6P55285 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CDH6P55285 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.02■□□□□ 0.31
CDH6P55285 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CDH6P55285 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
CDH6P55285 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CDH6P55285 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDH6P55285 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CDH6P55285 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDH6P55285 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.01■□□□□ 0.31
CDH6P55285 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDH6P55285 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDH6P55285 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
CDH6P55285 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.01■□□□□ 0.31
CDH6P55285 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CDH6P55285 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDH6P55285 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDH6P55285 AC007950.2-201ENST00000615045 2347 ntBASIC17.01■□□□□ 0.31
CDH6P55285 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDH6P55285 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC17.01■□□□□ 0.31
CDH6P55285 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDH6P55285 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CDH6P55285 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDH6P55285 AC023274.1-201ENST00000418278 595 ntBASIC17.01■□□□□ 0.31
CDH6P55285 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CDH6P55285 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDH6P55285 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.01■□□□□ 0.31
CDH6P55285 AC040169.1-201ENST00000565382 521 ntBASIC17.01■□□□□ 0.31
CDH6P55285 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
CDH6P55285 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CDH6P55285 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
CDH6P55285 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.01■□□□□ 0.31
CDH6P55285 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDH6P55285 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDH6P55285 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CDH6P55285 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDH6P55285 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CDH6P55285 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDH6P55285 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.01■□□□□ 0.31
CDH6P55285 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
CDH6P55285 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CDH6P55285 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC17.01■□□□□ 0.31
CDH6P55285 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDH6P55285 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDH6P55285 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CDH6P55285 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDH6P55285 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CDH6P55285 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CDH6P55285 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
CDH6P55285 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CDH6P55285 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDH6P55285 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms