Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC099548.2-209ENST00000480264 625 ntBASIC16.11■□□□□ 0.17
CXCL12P48061 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.11■□□□□ 0.17
CXCL12P48061 AC068587.3-201ENST00000526613 355 ntBASIC16.11■□□□□ 0.17
CXCL12P48061 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC16.11■□□□□ 0.17
CXCL12P48061 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
CXCL12P48061 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC16.11■□□□□ 0.17
CXCL12P48061 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC16.11■□□□□ 0.17
CXCL12P48061 BRI3BPP1-201ENST00000594224 787 ntBASIC16.11■□□□□ 0.17
CXCL12P48061 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC16.11■□□□□ 0.17
CXCL12P48061 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.11■□□□□ 0.17
CXCL12P48061 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CXCL12P48061 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CXCL12P48061 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CXCL12P48061 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CXCL12P48061 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CXCL12P48061 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CXCL12P48061 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CXCL12P48061 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CXCL12P48061 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CXCL12P48061 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
CXCL12P48061 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CXCL12P48061 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.11■□□□□ 0.17
CXCL12P48061 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
CXCL12P48061 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CXCL12P48061 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CXCL12P48061 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CXCL12P48061 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CXCL12P48061 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CXCL12P48061 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CXCL12P48061 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CXCL12P48061 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.1■□□□□ 0.17
CXCL12P48061 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CXCL12P48061 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.1■□□□□ 0.17
CXCL12P48061 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CXCL12P48061 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CXCL12P48061 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CXCL12P48061 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CXCL12P48061 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.1■□□□□ 0.17
CXCL12P48061 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CXCL12P48061 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CXCL12P48061 PCGF3-213ENST00000620529 1899 ntBASIC16.1■□□□□ 0.17
CXCL12P48061 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
CXCL12P48061 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
CXCL12P48061 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.1■□□□□ 0.17
CXCL12P48061 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CXCL12P48061 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CXCL12P48061 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CXCL12P48061 AC134915.1-201ENST00000426461 574 ntBASIC16.1■□□□□ 0.17
CXCL12P48061 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.1■□□□□ 0.17
CXCL12P48061 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CXCL12P48061 TPI1-206ENST00000488464 791 ntTSL 5 BASIC16.1■□□□□ 0.17
CXCL12P48061 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC16.1■□□□□ 0.17
CXCL12P48061 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.1■□□□□ 0.17
CXCL12P48061 AP000812.2-201ENST00000538934 718 ntBASIC16.1■□□□□ 0.17
CXCL12P48061 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CXCL12P48061 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CXCL12P48061 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.1■□□□□ 0.17
CXCL12P48061 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CXCL12P48061 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC16.1■□□□□ 0.17
CXCL12P48061 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CXCL12P48061 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.1■□□□□ 0.17
CXCL12P48061 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CXCL12P48061 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.1■□□□□ 0.17
CXCL12P48061 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
CXCL12P48061 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
CXCL12P48061 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CXCL12P48061 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC16.1■□□□□ 0.17
CXCL12P48061 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.1■□□□□ 0.17
CXCL12P48061 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CXCL12P48061 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CXCL12P48061 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.09■□□□□ 0.17
CXCL12P48061 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CXCL12P48061 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CXCL12P48061 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.09■□□□□ 0.17
CXCL12P48061 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CXCL12P48061 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.09■□□□□ 0.17
CXCL12P48061 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CXCL12P48061 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CXCL12P48061 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CXCL12P48061 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
CXCL12P48061 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CXCL12P48061 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CXCL12P48061 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CXCL12P48061 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CXCL12P48061 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CXCL12P48061 YBX1P6-201ENST00000442962 1002 ntBASIC16.09■□□□□ 0.17
CXCL12P48061 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC16.09■□□□□ 0.17
CXCL12P48061 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CXCL12P48061 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC16.09■□□□□ 0.17
CXCL12P48061 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.09■□□□□ 0.17
CXCL12P48061 AP001889.1-201ENST00000525414 633 ntBASIC16.09■□□□□ 0.17
CXCL12P48061 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC16.09■□□□□ 0.17
CXCL12P48061 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC16.09■□□□□ 0.17
CXCL12P48061 IGHV3OR16-16-201ENST00000563644 343 ntBASIC16.09■□□□□ 0.17
CXCL12P48061 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC16.09■□□□□ 0.17
CXCL12P48061 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.09■□□□□ 0.17
CXCL12P48061 AC010328.2-201ENST00000597698 1111 ntBASIC16.09■□□□□ 0.17
CXCL12P48061 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
CXCL12P48061 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CXCL12P48061 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms