Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN4P29074 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN4P29074 YBX2P1-201ENST00000394192 760 ntBASIC16.49■□□□□ 0.23
PTPN4P29074 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN4P29074 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC16.49■□□□□ 0.23
PTPN4P29074 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.49■□□□□ 0.23
PTPN4P29074 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN4P29074 AC108751.1-201ENST00000490852 363 ntBASIC16.49■□□□□ 0.23
PTPN4P29074 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.49■□□□□ 0.23
PTPN4P29074 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.49■□□□□ 0.23
PTPN4P29074 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC16.49■□□□□ 0.23
PTPN4P29074 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC16.49■□□□□ 0.23
PTPN4P29074 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.49■□□□□ 0.23
PTPN4P29074 AC010327.4-202ENST00000591484 748 ntBASIC16.49■□□□□ 0.23
PTPN4P29074 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.49■□□□□ 0.23
PTPN4P29074 AL691403.2-201ENST00000618460 490 ntBASIC16.49■□□□□ 0.23
PTPN4P29074 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
PTPN4P29074 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN4P29074 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN4P29074 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN4P29074 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN4P29074 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN4P29074 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.49■□□□□ 0.23
PTPN4P29074 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN4P29074 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN4P29074 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN4P29074 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN4P29074 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
PTPN4P29074 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN4P29074 AP005117.1-202ENST00000581724 1908 ntBASIC16.49■□□□□ 0.23
PTPN4P29074 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN4P29074 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
PTPN4P29074 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN4P29074 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN4P29074 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN4P29074 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN4P29074 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN4P29074 AC132938.5-201ENST00000624980 1813 ntBASIC16.48■□□□□ 0.23
PTPN4P29074 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
PTPN4P29074 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PTPN4P29074 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN4P29074 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.48■□□□□ 0.23
PTPN4P29074 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.48■□□□□ 0.23
PTPN4P29074 RPSAP43-201ENST00000402237 625 ntBASIC16.48■□□□□ 0.23
PTPN4P29074 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
PTPN4P29074 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.48■□□□□ 0.23
PTPN4P29074 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.48■□□□□ 0.23
PTPN4P29074 GPX1P2-201ENST00000429271 606 ntBASIC16.48■□□□□ 0.23
PTPN4P29074 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC16.48■□□□□ 0.23
PTPN4P29074 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
PTPN4P29074 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC16.48■□□□□ 0.23
PTPN4P29074 IGHV3-52-201ENST00000519770 353 ntBASIC16.48■□□□□ 0.23
PTPN4P29074 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.48■□□□□ 0.23
PTPN4P29074 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC16.48■□□□□ 0.23
PTPN4P29074 AC002347.1-201ENST00000569543 541 ntBASIC16.48■□□□□ 0.23
PTPN4P29074 AC004706.3-202ENST00000621574 984 ntBASIC16.48■□□□□ 0.23
PTPN4P29074 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.48■□□□□ 0.23
PTPN4P29074 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.48■□□□□ 0.23
PTPN4P29074 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
PTPN4P29074 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN4P29074 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN4P29074 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.48■□□□□ 0.23
PTPN4P29074 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN4P29074 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.48■□□□□ 0.23
PTPN4P29074 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.48■□□□□ 0.23
PTPN4P29074 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
PTPN4P29074 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN4P29074 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PTPN4P29074 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN4P29074 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PTPN4P29074 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
PTPN4P29074 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.47■□□□□ 0.23
PTPN4P29074 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.47■□□□□ 0.23
PTPN4P29074 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.47■□□□□ 0.23
PTPN4P29074 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
PTPN4P29074 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
PTPN4P29074 AC003669.1-201ENST00000334569 611 ntBASIC16.47■□□□□ 0.23
PTPN4P29074 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
PTPN4P29074 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC16.47■□□□□ 0.23
PTPN4P29074 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.47■□□□□ 0.23
PTPN4P29074 KLF4P1-201ENST00000412782 1185 ntBASIC16.47■□□□□ 0.23
PTPN4P29074 AC004832.2-201ENST00000426397 482 ntBASIC16.47■□□□□ 0.23
PTPN4P29074 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
PTPN4P29074 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.47■□□□□ 0.23
PTPN4P29074 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC16.47■□□□□ 0.23
PTPN4P29074 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN4P29074 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.47■□□□□ 0.23
PTPN4P29074 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms