Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 AC022210.1-201ENST00000449856 793 ntBASIC18.78■□□□□ 0.6
COL2A1P02458 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC18.78■□□□□ 0.6
COL2A1P02458 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
COL2A1P02458 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC18.78■□□□□ 0.6
COL2A1P02458 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC18.78■□□□□ 0.6
COL2A1P02458 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC18.78■□□□□ 0.6
COL2A1P02458 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL2A1P02458 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC18.78■□□□□ 0.6
COL2A1P02458 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL2A1P02458 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
COL2A1P02458 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC18.78■□□□□ 0.6
COL2A1P02458 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
COL2A1P02458 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
COL2A1P02458 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
COL2A1P02458 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
COL2A1P02458 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL2A1P02458 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL2A1P02458 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
COL2A1P02458 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL2A1P02458 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL2A1P02458 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
COL2A1P02458 AC234783.1-201ENST00000441761 496 ntBASIC18.77■□□□□ 0.6
COL2A1P02458 SNX29P1-201ENST00000548357 1007 ntBASIC18.77■□□□□ 0.6
COL2A1P02458 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL2A1P02458 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC18.77■□□□□ 0.6
COL2A1P02458 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC18.77■□□□□ 0.6
COL2A1P02458 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC18.77■□□□□ 0.6
COL2A1P02458 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
COL2A1P02458 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL2A1P02458 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL2A1P02458 MIR6799-201ENST00000620297 69 ntBASIC18.77■□□□□ 0.6
COL2A1P02458 ABBA01031660.1-201ENST00000635219 756 ntBASIC18.77■□□□□ 0.6
COL2A1P02458 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC18.77■□□□□ 0.6
COL2A1P02458 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL2A1P02458 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL2A1P02458 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL2A1P02458 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC18.77■□□□□ 0.6
COL2A1P02458 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL2A1P02458 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL2A1P02458 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
COL2A1P02458 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.77■□□□□ 0.6
COL2A1P02458 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL2A1P02458 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL2A1P02458 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.77■□□□□ 0.6
COL2A1P02458 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
COL2A1P02458 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL2A1P02458 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC18.77■□□□□ 0.6
COL2A1P02458 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL2A1P02458 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL2A1P02458 VILL-207ENST00000465644 1857 ntTSL 5 BASIC18.77■□□□□ 0.6
COL2A1P02458 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.77■□□□□ 0.6
COL2A1P02458 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.77■□□□□ 0.6
COL2A1P02458 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
COL2A1P02458 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL2A1P02458 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL2A1P02458 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
COL2A1P02458 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC18.77■□□□□ 0.59
COL2A1P02458 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
COL2A1P02458 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC18.77■□□□□ 0.59
COL2A1P02458 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC18.77■□□□□ 0.59
COL2A1P02458 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC18.77■□□□□ 0.59
COL2A1P02458 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC18.77■□□□□ 0.59
COL2A1P02458 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC18.77■□□□□ 0.59
COL2A1P02458 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
COL2A1P02458 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL2A1P02458 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL2A1P02458 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.77■□□□□ 0.59
COL2A1P02458 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.77■□□□□ 0.59
COL2A1P02458 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL2A1P02458 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL2A1P02458 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL2A1P02458 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL2A1P02458 ALOX12P2-203ENST00000570921 1945 ntBASIC18.76■□□□□ 0.59
COL2A1P02458 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL2A1P02458 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL2A1P02458 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL2A1P02458 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL2A1P02458 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
COL2A1P02458 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL2A1P02458 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL2A1P02458 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC18.76■□□□□ 0.59
COL2A1P02458 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL2A1P02458 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL2A1P02458 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL2A1P02458 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC18.76■□□□□ 0.59
COL2A1P02458 MIR658-201ENST00000385210 100 ntBASIC18.76■□□□□ 0.59
COL2A1P02458 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL2A1P02458 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL2A1P02458 KRT18P43-201ENST00000469825 1281 ntBASIC18.76■□□□□ 0.59
COL2A1P02458 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC18.76■□□□□ 0.59
COL2A1P02458 AC233724.13-201ENST00000598383 410 ntBASIC18.76■□□□□ 0.59
COL2A1P02458 AL049840.4-201ENST00000602422 811 ntBASIC18.76■□□□□ 0.59
COL2A1P02458 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC18.76■□□□□ 0.59
COL2A1P02458 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC18.76■□□□□ 0.59
COL2A1P02458 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC18.76■□□□□ 0.59
COL2A1P02458 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
COL2A1P02458 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL2A1P02458 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL2A1P02458 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL2A1P02458 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms