Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
PDGFBP01127 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PDGFBP01127 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PDGFBP01127 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PDGFBP01127 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PDGFBP01127 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PDGFBP01127 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PDGFBP01127 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.22■□□□□ 0.19
PDGFBP01127 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PDGFBP01127 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
PDGFBP01127 AC074338.1-201ENST00000416825 156 ntBASIC16.22■□□□□ 0.19
PDGFBP01127 RPS2P36-201ENST00000456516 831 ntBASIC16.22■□□□□ 0.19
PDGFBP01127 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
PDGFBP01127 SCARNA20.5-201ENST00000516991 142 ntBASIC16.22■□□□□ 0.19
PDGFBP01127 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC16.22■□□□□ 0.19
PDGFBP01127 AC120045.2-201ENST00000567334 178 ntBASIC16.22■□□□□ 0.19
PDGFBP01127 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.22■□□□□ 0.19
PDGFBP01127 SPCS2P2-201ENST00000603270 608 ntBASIC16.22■□□□□ 0.19
PDGFBP01127 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PDGFBP01127 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.22■□□□□ 0.19
PDGFBP01127 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PDGFBP01127 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PDGFBP01127 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.22■□□□□ 0.19
PDGFBP01127 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PDGFBP01127 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
PDGFBP01127 AC138028.6-201ENST00000616106 1482 ntBASIC16.22■□□□□ 0.19
PDGFBP01127 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PDGFBP01127 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
PDGFBP01127 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
PDGFBP01127 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PDGFBP01127 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PDGFBP01127 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
PDGFBP01127 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.21■□□□□ 0.19
PDGFBP01127 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC16.21■□□□□ 0.19
PDGFBP01127 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PDGFBP01127 PCDHB17P-201ENST00000539533 2393 ntBASIC16.21■□□□□ 0.19
PDGFBP01127 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
PDGFBP01127 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PDGFBP01127 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PDGFBP01127 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PDGFBP01127 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.21■□□□□ 0.19
PDGFBP01127 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.21■□□□□ 0.19
PDGFBP01127 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PDGFBP01127 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.21■□□□□ 0.19
PDGFBP01127 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PDGFBP01127 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PDGFBP01127 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC16.21■□□□□ 0.19
PDGFBP01127 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PDGFBP01127 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PDGFBP01127 VDAC1P7-201ENST00000462417 847 ntBASIC16.21■□□□□ 0.19
PDGFBP01127 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC16.21■□□□□ 0.19
PDGFBP01127 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.21■□□□□ 0.19
PDGFBP01127 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PDGFBP01127 CHMP4BP1-201ENST00000556017 588 ntBASIC16.21■□□□□ 0.19
PDGFBP01127 HNRNPA1P48-202ENST00000565308 961 ntBASIC16.21■□□□□ 0.19
PDGFBP01127 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC16.21■□□□□ 0.19
PDGFBP01127 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.21■□□□□ 0.19
PDGFBP01127 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PDGFBP01127 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.21■□□□□ 0.19
PDGFBP01127 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PDGFBP01127 AC092068.3-201ENST00000587894 2016 ntBASIC16.21■□□□□ 0.18
PDGFBP01127 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
PDGFBP01127 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.21■□□□□ 0.18
PDGFBP01127 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.18
PDGFBP01127 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
PDGFBP01127 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.2■□□□□ 0.18
PDGFBP01127 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDGFBP01127 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PDGFBP01127 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PDGFBP01127 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC16.2■□□□□ 0.18
PDGFBP01127 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PDGFBP01127 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PDGFBP01127 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDGFBP01127 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.2■□□□□ 0.18
PDGFBP01127 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.2■□□□□ 0.18
PDGFBP01127 TNXA-203ENST00000507684 2038 ntBASIC16.2■□□□□ 0.18
PDGFBP01127 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PDGFBP01127 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDGFBP01127 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDGFBP01127 AC104457.1-201ENST00000401024 814 ntBASIC16.2■□□□□ 0.18
PDGFBP01127 AZGP1P1-201ENST00000411909 902 ntBASIC16.2■□□□□ 0.18
PDGFBP01127 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.2■□□□□ 0.18
PDGFBP01127 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.2■□□□□ 0.18
PDGFBP01127 BX284668.4-201ENST00000453917 508 ntBASIC16.2■□□□□ 0.18
PDGFBP01127 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
PDGFBP01127 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDGFBP01127 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC16.2■□□□□ 0.18
PDGFBP01127 FADS2-212ENST00000522639 360 ntTSL 5 BASIC16.2■□□□□ 0.18
PDGFBP01127 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC16.2■□□□□ 0.18
PDGFBP01127 AC023310.1-201ENST00000554836 735 ntBASIC16.2■□□□□ 0.18
PDGFBP01127 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.2■□□□□ 0.18
PDGFBP01127 FADS2-215ENST00000574708 385 ntTSL 3 BASIC16.2■□□□□ 0.18
PDGFBP01127 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PDGFBP01127 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PDGFBP01127 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDGFBP01127 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDGFBP01127 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC16.2■□□□□ 0.18
PDGFBP01127 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PDGFBP01127 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDGFBP01127 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms