Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA1O95477 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC13.74□□□□□ -0.21
ABCA1O95477 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC13.74□□□□□ -0.21
ABCA1O95477 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC13.74□□□□□ -0.21
ABCA1O95477 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC13.74□□□□□ -0.21
ABCA1O95477 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA1O95477 AC009407.1-201ENST00000568958 598 ntBASIC13.74□□□□□ -0.21
ABCA1O95477 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC13.74□□□□□ -0.21
ABCA1O95477 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC13.74□□□□□ -0.21
ABCA1O95477 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA1O95477 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA1O95477 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA1O95477 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC13.74□□□□□ -0.21
ABCA1O95477 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC13.74□□□□□ -0.21
ABCA1O95477 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA1O95477 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
ABCA1O95477 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC13.73□□□□□ -0.21
ABCA1O95477 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC13.73□□□□□ -0.21
ABCA1O95477 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA1O95477 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA1O95477 LINC02199-201ENST00000506655 2702 ntBASIC13.73□□□□□ -0.21
ABCA1O95477 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA1O95477 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
ABCA1O95477 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA1O95477 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA1O95477 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC13.73□□□□□ -0.21
ABCA1O95477 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC13.73□□□□□ -0.21
ABCA1O95477 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC13.73□□□□□ -0.21
ABCA1O95477 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
ABCA1O95477 KRT17P7-201ENST00000451704 1104 ntBASIC13.73□□□□□ -0.21
ABCA1O95477 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC13.73□□□□□ -0.21
ABCA1O95477 AC017083.2-201ENST00000608069 979 ntBASIC13.73□□□□□ -0.21
ABCA1O95477 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA1O95477 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA1O95477 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC13.73□□□□□ -0.21
ABCA1O95477 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA1O95477 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA1O95477 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC13.73□□□□□ -0.21
ABCA1O95477 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC13.73□□□□□ -0.21
ABCA1O95477 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA1O95477 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC13.73□□□□□ -0.21
ABCA1O95477 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
ABCA1O95477 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA1O95477 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA1O95477 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA1O95477 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA1O95477 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA1O95477 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC13.73□□□□□ -0.21
ABCA1O95477 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC13.73□□□□□ -0.21
ABCA1O95477 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA1O95477 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
ABCA1O95477 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA1O95477 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA1O95477 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC13.73□□□□□ -0.21
ABCA1O95477 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC13.73□□□□□ -0.21
ABCA1O95477 FAM220BP-201ENST00000377689 816 ntBASIC13.73□□□□□ -0.21
ABCA1O95477 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
ABCA1O95477 AL080243.2-201ENST00000418783 582 ntBASIC13.73□□□□□ -0.21
ABCA1O95477 MTND6P24-201ENST00000440466 518 ntBASIC13.73□□□□□ -0.21
ABCA1O95477 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC13.73□□□□□ -0.21
ABCA1O95477 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC13.73□□□□□ -0.21
ABCA1O95477 CDK4-206ENST00000549606 558 ntTSL 2 BASIC13.73□□□□□ -0.21
ABCA1O95477 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC13.73□□□□□ -0.21
ABCA1O95477 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC13.73□□□□□ -0.21
ABCA1O95477 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ABCA1O95477 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
ABCA1O95477 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
ABCA1O95477 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ABCA1O95477 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
ABCA1O95477 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
ABCA1O95477 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ABCA1O95477 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
ABCA1O95477 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
ABCA1O95477 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ABCA1O95477 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ABCA1O95477 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
ABCA1O95477 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ABCA1O95477 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
ABCA1O95477 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ABCA1O95477 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC13.72□□□□□ -0.21
ABCA1O95477 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
ABCA1O95477 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
ABCA1O95477 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
ABCA1O95477 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC13.72□□□□□ -0.21
ABCA1O95477 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC13.72□□□□□ -0.21
ABCA1O95477 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
ABCA1O95477 PGF-202ENST00000405431 666 ntTSL 5 BASIC13.72□□□□□ -0.21
ABCA1O95477 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ABCA1O95477 BTBD7P1-201ENST00000447253 1453 ntBASIC13.72□□□□□ -0.21
ABCA1O95477 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
ABCA1O95477 HLA-V-204ENST00000476601 1289 ntBASIC13.72□□□□□ -0.21
ABCA1O95477 KRT18P34-201ENST00000488218 1270 ntBASIC13.72□□□□□ -0.21
ABCA1O95477 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC13.72□□□□□ -0.21
ABCA1O95477 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC13.72□□□□□ -0.21
ABCA1O95477 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
ABCA1O95477 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ABCA1O95477 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
ABCA1O95477 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
ABCA1O95477 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
ABCA1O95477 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms