Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
CLDN3O15551 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
CLDN3O15551 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CLDN3O15551 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLDN3O15551 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.85■□□□□ 0.45
CLDN3O15551 Z92544.3-201ENST00000624747 417 ntBASIC17.85■□□□□ 0.45
CLDN3O15551 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.85■□□□□ 0.45
CLDN3O15551 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CLDN3O15551 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CLDN3O15551 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.85■□□□□ 0.45
CLDN3O15551 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLDN3O15551 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLDN3O15551 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLDN3O15551 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLDN3O15551 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.85■□□□□ 0.45
CLDN3O15551 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN3O15551 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN3O15551 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN3O15551 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.84■□□□□ 0.45
CLDN3O15551 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN3O15551 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN3O15551 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN3O15551 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN3O15551 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC17.84■□□□□ 0.45
CLDN3O15551 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN3O15551 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.84■□□□□ 0.45
CLDN3O15551 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.84■□□□□ 0.45
CLDN3O15551 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.84■□□□□ 0.45
CLDN3O15551 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN3O15551 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN3O15551 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
CLDN3O15551 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN3O15551 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.84■□□□□ 0.45
CLDN3O15551 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN3O15551 PNMT-202ENST00000394246 821 ntTSL 2 BASIC17.84■□□□□ 0.45
CLDN3O15551 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.84■□□□□ 0.45
CLDN3O15551 CNN2P2-201ENST00000443536 909 ntBASIC17.84■□□□□ 0.45
CLDN3O15551 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17.84■□□□□ 0.45
CLDN3O15551 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC17.84■□□□□ 0.45
CLDN3O15551 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC17.84■□□□□ 0.45
CLDN3O15551 CNN2P3-201ENST00000450201 906 ntBASIC17.84■□□□□ 0.45
CLDN3O15551 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN3O15551 RNA5SP410-201ENST00000516285 106 ntBASIC17.84■□□□□ 0.45
CLDN3O15551 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC17.84■□□□□ 0.45
CLDN3O15551 AC018529.1-201ENST00000613063 361 ntBASIC17.84■□□□□ 0.45
CLDN3O15551 AL136317.3-201ENST00000618497 906 ntBASIC17.84■□□□□ 0.45
CLDN3O15551 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.84■□□□□ 0.45
CLDN3O15551 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.84■□□□□ 0.45
CLDN3O15551 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.84■□□□□ 0.45
CLDN3O15551 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN3O15551 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN3O15551 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN3O15551 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN3O15551 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN3O15551 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN3O15551 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC17.84■□□□□ 0.45
CLDN3O15551 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN3O15551 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN3O15551 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CLDN3O15551 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CLDN3O15551 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.83■□□□□ 0.45
CLDN3O15551 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CLDN3O15551 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CLDN3O15551 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
CLDN3O15551 AC008677.1-201ENST00000519230 1561 ntBASIC17.83■□□□□ 0.45
CLDN3O15551 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CLDN3O15551 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CLDN3O15551 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.83■□□□□ 0.45
CLDN3O15551 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.83■□□□□ 0.45
CLDN3O15551 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
CLDN3O15551 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CLDN3O15551 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.83■□□□□ 0.44
CLDN3O15551 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
CLDN3O15551 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CLDN3O15551 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
CLDN3O15551 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.83■□□□□ 0.44
CLDN3O15551 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.83■□□□□ 0.44
CLDN3O15551 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CLDN3O15551 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.83■□□□□ 0.44
CLDN3O15551 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.83■□□□□ 0.44
CLDN3O15551 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC17.83■□□□□ 0.44
CLDN3O15551 AC024267.1-201ENST00000582320 895 ntBASIC17.83■□□□□ 0.44
CLDN3O15551 AC015911.4-201ENST00000588022 1070 ntBASIC17.83■□□□□ 0.44
CLDN3O15551 MIR6080-201ENST00000617359 66 ntBASIC17.83■□□□□ 0.44
CLDN3O15551 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC17.83■□□□□ 0.44
CLDN3O15551 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC17.83■□□□□ 0.44
CLDN3O15551 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.83■□□□□ 0.44
CLDN3O15551 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CLDN3O15551 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.83■□□□□ 0.44
CLDN3O15551 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
CLDN3O15551 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CLDN3O15551 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.83■□□□□ 0.44
CLDN3O15551 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CLDN3O15551 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
CLDN3O15551 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CLDN3O15551 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
CLDN3O15551 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.83■□□□□ 0.44
CLDN3O15551 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CLDN3O15551 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.83■□□□□ 0.44
CLDN3O15551 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms