Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 RNU1-129P-201ENST00000384064 167 ntBASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 BAD-202ENST00000394531 631 ntTSL 3 BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 SPDYE14P-201ENST00000442619 822 ntBASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 AC060834.1-201ENST00000443027 2032 ntBASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 AC125807.1-201ENST00000483097 614 ntBASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 BAD-207ENST00000544785 525 ntTSL 3 BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 U1.21-201ENST00000580816 167 ntBASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 AC008267.7-201ENST00000624570 1194 ntBASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 TAF8-206ENST00000472818 719 ntTSL 2 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 AC026691.1-201ENST00000602502 2017 ntBASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.97■□□□□ 0.15
PCDHGA3Q9Y5H0 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA3Q9Y5H0 FRMD6-AS1-201ENST00000617151 2229 ntBASIC15.96■□□□□ 0.15
PCDHGA3Q9Y5H0 FLJ16779-201ENST00000612722 7638 ntBASIC15.96■□□□□ 0.15
PCDHGA3Q9Y5H0 EGFEM1P-202ENST00000431685 1563 ntBASIC15.96■□□□□ 0.15
PCDHGA3Q9Y5H0 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA3Q9Y5H0 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.96■□□□□ 0.15
PCDHGA3Q9Y5H0 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDHGA3Q9Y5H0 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms