Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA2Q9Y261 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA2Q9Y261 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA2Q9Y261 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA2Q9Y261 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA2Q9Y261 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA2Q9Y261 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA2Q9Y261 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
FOXA2Q9Y261 VILL-207ENST00000465644 1857 ntTSL 5 BASIC13.27□□□□□ -0.28
FOXA2Q9Y261 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA2Q9Y261 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC13.27□□□□□ -0.28
FOXA2Q9Y261 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
FOXA2Q9Y261 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC13.27□□□□□ -0.28
FOXA2Q9Y261 SLC9A3P2-201ENST00000447821 2021 ntBASIC13.27□□□□□ -0.28
FOXA2Q9Y261 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
FOXA2Q9Y261 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
FOXA2Q9Y261 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA2Q9Y261 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC13.27□□□□□ -0.28
FOXA2Q9Y261 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC13.27□□□□□ -0.28
FOXA2Q9Y261 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
FOXA2Q9Y261 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA2Q9Y261 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA2Q9Y261 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA2Q9Y261 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 MIR648-201ENST00000385046 94 ntBASIC13.27□□□□□ -0.29
FOXA2Q9Y261 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 LBH-204ENST00000406087 559 ntTSL 4 BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 HCG4B-203ENST00000450128 991 ntBASIC13.27□□□□□ -0.29
FOXA2Q9Y261 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 CXCL1P1-201ENST00000502804 216 ntBASIC13.27□□□□□ -0.29
FOXA2Q9Y261 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 OR7E47P-204ENST00000575924 449 ntBASIC13.27□□□□□ -0.29
FOXA2Q9Y261 WT1-AS_2.1-201ENST00000613208 137 ntBASIC13.27□□□□□ -0.29
FOXA2Q9Y261 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA2Q9Y261 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 CYP51A1P2-201ENST00000419457 1499 ntBASIC13.26□□□□□ -0.29
FOXA2Q9Y261 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 AC007967.2-201ENST00000432613 625 ntBASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms