Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 MIR943-201ENST00000401286 94 ntBASIC17.41■□□□□ 0.38
SIX4Q9UIU6 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 PAM16-215ENST00000577031 548 ntTSL 4 BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 AL355385.1-201ENST00000606123 409 ntBASIC17.41■□□□□ 0.38
SIX4Q9UIU6 SPDYE12P-201ENST00000618416 771 ntBASIC17.41■□□□□ 0.38
SIX4Q9UIU6 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 PGR-209ENST00000617858 2816 ntTSL 5 BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SIX4Q9UIU6 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 SP100-205ENST00000409824 1802 ntTSL 5 BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 MTND6P24-201ENST00000440466 518 ntBASIC17.4■□□□□ 0.38
SIX4Q9UIU6 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 AC097493.3-201ENST00000509725 367 ntBASIC17.4■□□□□ 0.38
SIX4Q9UIU6 AC069120.2-201ENST00000524091 540 ntBASIC17.4■□□□□ 0.38
SIX4Q9UIU6 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.4■□□□□ 0.38
SIX4Q9UIU6 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SIX4Q9UIU6 CYP2T1P-202ENST00000641596 2535 ntBASIC17.4■□□□□ 0.38
SIX4Q9UIU6 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.38
SIX4Q9UIU6 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
SIX4Q9UIU6 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 AC055876.3-201ENST00000431496 288 ntBASIC17.39■□□□□ 0.37
SIX4Q9UIU6 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 AL158211.3-201ENST00000607385 239 ntBASIC17.39■□□□□ 0.37
SIX4Q9UIU6 AC138649.4-201ENST00000612222 287 ntBASIC17.39■□□□□ 0.37
SIX4Q9UIU6 AL138828.2-201ENST00000615812 383 ntBASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms