Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
LHX3Q9UBR4 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.42■□□□□ 0.22
LHX3Q9UBR4 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LHX3Q9UBR4 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LHX3Q9UBR4 RN7SL828P-201ENST00000607615 303 ntBASIC16.42■□□□□ 0.22
LHX3Q9UBR4 AL133215.2-201ENST00000609242 977 ntBASIC16.42■□□□□ 0.22
LHX3Q9UBR4 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LHX3Q9UBR4 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LHX3Q9UBR4 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.42■□□□□ 0.22
LHX3Q9UBR4 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.42■□□□□ 0.22
LHX3Q9UBR4 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
LHX3Q9UBR4 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
LHX3Q9UBR4 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
LHX3Q9UBR4 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
LHX3Q9UBR4 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LHX3Q9UBR4 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.42■□□□□ 0.22
LHX3Q9UBR4 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
LHX3Q9UBR4 PKD1P1-201ENST00000458669 6805 ntBASIC16.42■□□□□ 0.22
LHX3Q9UBR4 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.42■□□□□ 0.22
LHX3Q9UBR4 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 AL035456.1-201ENST00000456064 1369 ntBASIC16.41■□□□□ 0.22
LHX3Q9UBR4 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 AL596087.1-201ENST00000400979 1969 ntBASIC16.41■□□□□ 0.22
LHX3Q9UBR4 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 AL390955.2-201ENST00000603032 514 ntBASIC16.41■□□□□ 0.22
LHX3Q9UBR4 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.41■□□□□ 0.22
LHX3Q9UBR4 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 TREML5P-201ENST00000421694 576 ntBASIC16.4■□□□□ 0.22
LHX3Q9UBR4 MTND6P24-201ENST00000440466 518 ntBASIC16.4■□□□□ 0.22
LHX3Q9UBR4 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 SPDYE12P-201ENST00000618416 771 ntBASIC16.4■□□□□ 0.22
LHX3Q9UBR4 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LHX3Q9UBR4 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.39■□□□□ 0.22
LHX3Q9UBR4 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.39■□□□□ 0.22
LHX3Q9UBR4 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.22
LHX3Q9UBR4 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.22
LHX3Q9UBR4 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.22
LHX3Q9UBR4 FO538757.1-201ENST00000623083 1397 ntBASIC16.39■□□□□ 0.21
LHX3Q9UBR4 AL136982.4-201ENST00000437689 1740 ntBASIC16.39■□□□□ 0.21
LHX3Q9UBR4 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
LHX3Q9UBR4 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
LHX3Q9UBR4 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.39■□□□□ 0.21
LHX3Q9UBR4 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.39■□□□□ 0.21
LHX3Q9UBR4 CYP2T1P-202ENST00000641596 2535 ntBASIC16.39■□□□□ 0.21
LHX3Q9UBR4 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.39■□□□□ 0.21
LHX3Q9UBR4 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LHX3Q9UBR4 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
LHX3Q9UBR4 MIR943-201ENST00000401286 94 ntBASIC16.39■□□□□ 0.21
LHX3Q9UBR4 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms