Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF41Q9H4P4 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC19.25■□□□□ 0.67
RNF41Q9H4P4 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF41Q9H4P4 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
RNF41Q9H4P4 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RNF41Q9H4P4 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF41Q9H4P4 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RNF41Q9H4P4 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC19.25■□□□□ 0.67
RNF41Q9H4P4 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 PMS2P2-201ENST00000425039 1128 ntBASIC19.24■□□□□ 0.67
RNF41Q9H4P4 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RNF41Q9H4P4 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 AC008677.1-201ENST00000519230 1561 ntBASIC19.23■□□□□ 0.67
RNF41Q9H4P4 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 AC067863.1-201ENST00000494933 530 ntBASIC19.23■□□□□ 0.67
RNF41Q9H4P4 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 AC003101.2-201ENST00000612557 442 ntBASIC19.23■□□□□ 0.67
RNF41Q9H4P4 AC007967.4-201ENST00000614700 386 ntBASIC19.23■□□□□ 0.67
RNF41Q9H4P4 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 GCK-209ENST00000616242 2260 ntTSL 5 BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF41Q9H4P4 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF41Q9H4P4 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF41Q9H4P4 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF41Q9H4P4 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF41Q9H4P4 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF41Q9H4P4 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF41Q9H4P4 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF41Q9H4P4 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF41Q9H4P4 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF41Q9H4P4 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC19.22■□□□□ 0.67
RNF41Q9H4P4 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC19.22■□□□□ 0.67
RNF41Q9H4P4 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF41Q9H4P4 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
RNF41Q9H4P4 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC19.22■□□□□ 0.67
RNF41Q9H4P4 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF41Q9H4P4 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF41Q9H4P4 AC006449.5-201ENST00000610658 2098 ntBASIC19.22■□□□□ 0.67
RNF41Q9H4P4 AL645939.2-201ENST00000427340 991 ntBASIC19.22■□□□□ 0.67
RNF41Q9H4P4 FAM86GP-201ENST00000448322 971 ntBASIC19.22■□□□□ 0.67
RNF41Q9H4P4 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC19.22■□□□□ 0.67
RNF41Q9H4P4 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC19.22■□□□□ 0.67
RNF41Q9H4P4 AC026979.3-201ENST00000607315 403 ntBASIC19.22■□□□□ 0.67
RNF41Q9H4P4 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF41Q9H4P4 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF41Q9H4P4 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF41Q9H4P4 AC092364.2-201ENST00000596710 2692 ntBASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms