Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 GGT3P-204ENST00000453783 1664 ntBASIC15.19■□□□□ 0.02
UBQLN3Q9H347 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 AL671277.1-201ENST00000429656 993 ntBASIC15.19■□□□□ 0.02
UBQLN3Q9H347 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 FAM86C2P-203ENST00000528684 1004 ntBASIC15.19■□□□□ 0.02
UBQLN3Q9H347 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 SNHG9-202ENST00000564014 471 ntBASIC15.19■□□□□ 0.02
UBQLN3Q9H347 RARRES2P8-201ENST00000566335 367 ntBASIC15.19■□□□□ 0.02
UBQLN3Q9H347 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 AC022145.2-201ENST00000598203 171 ntBASIC15.19■□□□□ 0.02
UBQLN3Q9H347 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.19■□□□□ 0.02
UBQLN3Q9H347 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
UBQLN3Q9H347 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 AKAP8P1-201ENST00000434743 1349 ntBASIC15.18■□□□□ 0.02
UBQLN3Q9H347 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 BLK-205ENST00000529894 2017 ntTSL 5 BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 METTL23-205ENST00000588302 925 ntTSL 5 BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 AC026120.1-201ENST00000611536 926 ntBASIC15.18■□□□□ 0.02
UBQLN3Q9H347 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 SNX33P1-201ENST00000592116 1762 ntBASIC15.18■□□□□ 0.02
UBQLN3Q9H347 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 PAUPAR-201ENST00000630360 2965 ntBASIC15.18■□□□□ 0.02
UBQLN3Q9H347 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
UBQLN3Q9H347 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
UBQLN3Q9H347 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC15.17■□□□□ 0.02
UBQLN3Q9H347 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
UBQLN3Q9H347 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
UBQLN3Q9H347 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
UBQLN3Q9H347 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
UBQLN3Q9H347 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
UBQLN3Q9H347 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
UBQLN3Q9H347 AL671710.1-201ENST00000610245 2349 ntBASIC15.17■□□□□ 0.02
UBQLN3Q9H347 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms