Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
PAAF1Q9BRP4 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PAAF1Q9BRP4 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.33■□□□□ 0.37
PAAF1Q9BRP4 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
PAAF1Q9BRP4 REXO1L8P-201ENST00000604378 1897 ntBASIC17.33■□□□□ 0.37
PAAF1Q9BRP4 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC17.33■□□□□ 0.37
PAAF1Q9BRP4 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC17.33■□□□□ 0.37
PAAF1Q9BRP4 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
PAAF1Q9BRP4 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
PAAF1Q9BRP4 AL592424.1-201ENST00000563624 1536 ntBASIC17.33■□□□□ 0.37
PAAF1Q9BRP4 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
PAAF1Q9BRP4 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
PAAF1Q9BRP4 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 SPDYE19P-201ENST00000338590 713 ntBASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 HIST3H2BA-201ENST00000436555 524 ntBASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 AC114501.2-201ENST00000439631 535 ntBASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 SERBP1P3-201ENST00000459980 809 ntBASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 AL365330.1-201ENST00000607459 531 ntBASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 AC004461.2-201ENST00000629517 803 ntBASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 AD000864.1-201ENST00000624076 2295 ntBASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PAAF1Q9BRP4 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 DOC2GP-202ENST00000514950 1163 ntBASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PAAF1Q9BRP4 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 COX5BP8-201ENST00000416911 349 ntBASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 POU5F1P6-201ENST00000466990 990 ntBASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 TP53TG3HP-202ENST00000569755 579 ntBASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 ARL16-202ENST00000570561 768 ntTSL 2 BASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 CHCHD2P3-201ENST00000603038 451 ntBASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.31■□□□□ 0.36
PAAF1Q9BRP4 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms