Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC26.47■■□□□ 1.83
IFT140Q96RY7 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC26.47■■□□□ 1.83
IFT140Q96RY7 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC26.47■■□□□ 1.83
IFT140Q96RY7 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
IFT140Q96RY7 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
IFT140Q96RY7 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC26.47■■□□□ 1.83
IFT140Q96RY7 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC26.46■■□□□ 1.83
IFT140Q96RY7 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC26.46■■□□□ 1.83
IFT140Q96RY7 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC26.46■■□□□ 1.83
IFT140Q96RY7 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
IFT140Q96RY7 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC26.46■■□□□ 1.83
IFT140Q96RY7 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC26.46■■□□□ 1.83
IFT140Q96RY7 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
IFT140Q96RY7 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC26.46■■□□□ 1.83
IFT140Q96RY7 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC26.46■■□□□ 1.83
IFT140Q96RY7 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
IFT140Q96RY7 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC26.46■■□□□ 1.83
IFT140Q96RY7 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
IFT140Q96RY7 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
IFT140Q96RY7 AP001582.1-201ENST00000525856 295 ntBASIC26.46■■□□□ 1.83
IFT140Q96RY7 RN7SL574P-201ENST00000581512 297 ntBASIC26.46■■□□□ 1.83
IFT140Q96RY7 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC26.46■■□□□ 1.83
IFT140Q96RY7 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC26.46■■□□□ 1.83
IFT140Q96RY7 AC079336.7-201ENST00000623428 1078 ntBASIC26.46■■□□□ 1.83
IFT140Q96RY7 AC132938.4-201ENST00000623835 848 ntBASIC26.46■■□□□ 1.83
IFT140Q96RY7 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC26.46■■□□□ 1.83
IFT140Q96RY7 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
IFT140Q96RY7 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC26.46■■□□□ 1.83
IFT140Q96RY7 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC26.46■■□□□ 1.83
IFT140Q96RY7 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
IFT140Q96RY7 AMT-206ENST00000458307 1860 ntTSL 2 BASIC26.46■■□□□ 1.83
IFT140Q96RY7 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
IFT140Q96RY7 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
IFT140Q96RY7 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC26.46■■□□□ 1.83
IFT140Q96RY7 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
IFT140Q96RY7 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
IFT140Q96RY7 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
IFT140Q96RY7 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC26.45■■□□□ 1.82
IFT140Q96RY7 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC26.45■■□□□ 1.82
IFT140Q96RY7 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC26.45■■□□□ 1.82
IFT140Q96RY7 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC26.45■■□□□ 1.82
IFT140Q96RY7 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC26.45■■□□□ 1.82
IFT140Q96RY7 BNIP3P1-202ENST00000550043 1585 ntBASIC26.45■■□□□ 1.82
IFT140Q96RY7 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC26.45■■□□□ 1.82
IFT140Q96RY7 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
IFT140Q96RY7 AP005019.2-201ENST00000615104 511 ntBASIC26.45■■□□□ 1.82
IFT140Q96RY7 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC26.45■■□□□ 1.82
IFT140Q96RY7 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC26.45■■□□□ 1.82
IFT140Q96RY7 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
IFT140Q96RY7 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC26.45■■□□□ 1.82
IFT140Q96RY7 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
IFT140Q96RY7 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
IFT140Q96RY7 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
IFT140Q96RY7 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC26.44■■□□□ 1.82
IFT140Q96RY7 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
IFT140Q96RY7 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC26.44■■□□□ 1.82
IFT140Q96RY7 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
IFT140Q96RY7 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
IFT140Q96RY7 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC26.44■■□□□ 1.82
IFT140Q96RY7 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC26.44■■□□□ 1.82
IFT140Q96RY7 KRT18P25-201ENST00000508931 1278 ntBASIC26.44■■□□□ 1.82
IFT140Q96RY7 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC26.44■■□□□ 1.82
IFT140Q96RY7 PRKXP1-201ENST00000561423 1122 ntBASIC26.44■■□□□ 1.82
IFT140Q96RY7 MIR3907-201ENST00000579424 151 ntBASIC26.44■■□□□ 1.82
IFT140Q96RY7 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC26.44■■□□□ 1.82
IFT140Q96RY7 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
IFT140Q96RY7 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
IFT140Q96RY7 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
IFT140Q96RY7 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
IFT140Q96RY7 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC26.44■■□□□ 1.82
IFT140Q96RY7 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC26.44■■□□□ 1.82
IFT140Q96RY7 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC26.44■■□□□ 1.82
IFT140Q96RY7 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC26.44■■□□□ 1.82
IFT140Q96RY7 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
IFT140Q96RY7 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC26.44■■□□□ 1.82
IFT140Q96RY7 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
IFT140Q96RY7 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC26.43■■□□□ 1.82
IFT140Q96RY7 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
IFT140Q96RY7 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
IFT140Q96RY7 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
IFT140Q96RY7 AC044849.1-201ENST00000519737 1188 ntBASIC26.43■■□□□ 1.82
IFT140Q96RY7 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
IFT140Q96RY7 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
IFT140Q96RY7 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC26.43■■□□□ 1.82
IFT140Q96RY7 SLC25A24-204ENST00000569674 2357 ntBASIC26.43■■□□□ 1.82
IFT140Q96RY7 LINC01144-201ENST00000626198 1710 ntBASIC26.43■■□□□ 1.82
IFT140Q96RY7 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
IFT140Q96RY7 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC26.43■■□□□ 1.82
IFT140Q96RY7 LETM1P2-201ENST00000597330 2178 ntBASIC26.43■■□□□ 1.82
IFT140Q96RY7 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC26.43■■□□□ 1.82
IFT140Q96RY7 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
IFT140Q96RY7 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
IFT140Q96RY7 AC008764.6-201ENST00000595909 2069 ntBASIC26.43■■□□□ 1.82
IFT140Q96RY7 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC26.43■■□□□ 1.82
IFT140Q96RY7 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC26.43■■□□□ 1.82
IFT140Q96RY7 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
IFT140Q96RY7 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC26.43■■□□□ 1.82
IFT140Q96RY7 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC26.42■■□□□ 1.82
IFT140Q96RY7 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC26.42■■□□□ 1.82
IFT140Q96RY7 MIR769-201ENST00000390225 118 ntBASIC26.42■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms