Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 TIMM8BP1-201ENST00000452384 211 ntBASIC12.66□□□□□ -0.38
CCDC140Q96MF4 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 KRT8P48-201ENST00000515599 1220 ntBASIC12.66□□□□□ -0.38
CCDC140Q96MF4 AC105233.2-201ENST00000523697 349 ntBASIC12.66□□□□□ -0.38
CCDC140Q96MF4 AF228730.5-201ENST00000530288 346 ntBASIC12.66□□□□□ -0.38
CCDC140Q96MF4 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 PUS1-205ENST00000535067 838 ntTSL 3 BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 SPDYE9P-201ENST00000570642 692 ntBASIC12.66□□□□□ -0.38
CCDC140Q96MF4 AC026120.1-201ENST00000611536 926 ntBASIC12.66□□□□□ -0.38
CCDC140Q96MF4 SPDYE10P-202ENST00000612005 668 ntBASIC12.66□□□□□ -0.38
CCDC140Q96MF4 SPDYE8P-202ENST00000612377 668 ntBASIC12.66□□□□□ -0.38
CCDC140Q96MF4 AC008267.7-201ENST00000624570 1194 ntBASIC12.66□□□□□ -0.38
CCDC140Q96MF4 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 LINC02199-201ENST00000506655 2702 ntBASIC12.66□□□□□ -0.38
CCDC140Q96MF4 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 AC024909.3-201ENST00000611513 2257 ntBASIC12.65□□□□□ -0.38
CCDC140Q96MF4 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 GPX1P2-201ENST00000429271 606 ntBASIC12.65□□□□□ -0.38
CCDC140Q96MF4 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 AC079140.1-201ENST00000508039 487 ntBASIC12.65□□□□□ -0.38
CCDC140Q96MF4 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 AC005829.1-201ENST00000570002 483 ntBASIC12.65□□□□□ -0.38
CCDC140Q96MF4 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 AC027307.2-201ENST00000591252 911 ntBASIC12.65□□□□□ -0.38
CCDC140Q96MF4 AC010327.4-202ENST00000591484 748 ntBASIC12.65□□□□□ -0.38
CCDC140Q96MF4 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 FOXO1B-201ENST00000504678 1527 ntBASIC12.65□□□□□ -0.38
CCDC140Q96MF4 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC12.65□□□□□ -0.38
CCDC140Q96MF4 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
CCDC140Q96MF4 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
CCDC140Q96MF4 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC12.65□□□□□ -0.39
CCDC140Q96MF4 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
CCDC140Q96MF4 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC12.65□□□□□ -0.39
CCDC140Q96MF4 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
CCDC140Q96MF4 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC12.65□□□□□ -0.39
CCDC140Q96MF4 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CCDC140Q96MF4 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms