Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC21.34■■□□□ 1.01
USP54Q70EL1 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
USP54Q70EL1 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
USP54Q70EL1 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
USP54Q70EL1 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
USP54Q70EL1 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC21.33■■□□□ 1.01
USP54Q70EL1 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC21.33■■□□□ 1.01
USP54Q70EL1 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
USP54Q70EL1 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
USP54Q70EL1 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
USP54Q70EL1 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
USP54Q70EL1 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
USP54Q70EL1 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC21.33■■□□□ 1
USP54Q70EL1 STX1A-203ENST00000395155 783 ntTSL 2 BASIC21.33■■□□□ 1
USP54Q70EL1 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC21.33■■□□□ 1
USP54Q70EL1 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC21.33■■□□□ 1
USP54Q70EL1 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC21.33■■□□□ 1
USP54Q70EL1 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC21.33■■□□□ 1
USP54Q70EL1 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC21.33■■□□□ 1
USP54Q70EL1 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC21.33■■□□□ 1
USP54Q70EL1 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
USP54Q70EL1 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
USP54Q70EL1 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
USP54Q70EL1 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1
USP54Q70EL1 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
USP54Q70EL1 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC21.33■■□□□ 1
USP54Q70EL1 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
USP54Q70EL1 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC21.33■■□□□ 1
USP54Q70EL1 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC21.32■■□□□ 1
USP54Q70EL1 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
USP54Q70EL1 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
USP54Q70EL1 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC21.32■■□□□ 1
USP54Q70EL1 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
USP54Q70EL1 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC21.32■■□□□ 1
USP54Q70EL1 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
USP54Q70EL1 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
USP54Q70EL1 C1QBPP1-201ENST00000400117 770 ntBASIC21.32■■□□□ 1
USP54Q70EL1 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
USP54Q70EL1 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
USP54Q70EL1 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC21.32■■□□□ 1
USP54Q70EL1 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
USP54Q70EL1 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC21.32■■□□□ 1
USP54Q70EL1 BTNL10-201ENST00000595971 695 ntBASIC21.32■■□□□ 1
USP54Q70EL1 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC21.32■■□□□ 1
USP54Q70EL1 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC21.32■■□□□ 1
USP54Q70EL1 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC21.32■■□□□ 1
USP54Q70EL1 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC21.32■■□□□ 1
USP54Q70EL1 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
USP54Q70EL1 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
USP54Q70EL1 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
USP54Q70EL1 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
USP54Q70EL1 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
USP54Q70EL1 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC21.32■■□□□ 1
USP54Q70EL1 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
USP54Q70EL1 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC21.32■■□□□ 1
USP54Q70EL1 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
USP54Q70EL1 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC21.32■■□□□ 1
USP54Q70EL1 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
USP54Q70EL1 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC21.32■■□□□ 1
USP54Q70EL1 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
USP54Q70EL1 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
USP54Q70EL1 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC21.31■■□□□ 1
USP54Q70EL1 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC21.31■■□□□ 1
USP54Q70EL1 BRF1-202ENST00000379932 884 ntTSL 5 BASIC21.31■■□□□ 1
USP54Q70EL1 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC21.31■■□□□ 1
USP54Q70EL1 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC21.31■■□□□ 1
USP54Q70EL1 PACS1-203ENST00000524815 628 ntTSL 4 BASIC21.31■■□□□ 1
USP54Q70EL1 SLC25A47P1-201ENST00000531577 414 ntBASIC21.31■■□□□ 1
USP54Q70EL1 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
USP54Q70EL1 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC21.31■■□□□ 1
USP54Q70EL1 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC21.31■■□□□ 1
USP54Q70EL1 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC21.31■■□□□ 1
USP54Q70EL1 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
USP54Q70EL1 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
USP54Q70EL1 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC21.31■■□□□ 1
USP54Q70EL1 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC21.31■■□□□ 1
USP54Q70EL1 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC21.31■■□□□ 1
USP54Q70EL1 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC21.31■■□□□ 1
USP54Q70EL1 OS9-205ENST00000413095 1660 ntTSL 2 BASIC21.31■■□□□ 1
USP54Q70EL1 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC21.31■■□□□ 1
USP54Q70EL1 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
USP54Q70EL1 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
USP54Q70EL1 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
USP54Q70EL1 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
USP54Q70EL1 AC093525.8-201ENST00000624099 1342 ntBASIC21.31■■□□□ 1
USP54Q70EL1 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
USP54Q70EL1 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.31■■□□□ 1
USP54Q70EL1 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC21.31■■□□□ 1
USP54Q70EL1 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
USP54Q70EL1 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
USP54Q70EL1 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
USP54Q70EL1 MIR1908-201ENST00000410394 80 ntBASIC21.31■■□□□ 1
USP54Q70EL1 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC21.31■■□□□ 1
USP54Q70EL1 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC21.31■■□□□ 1
USP54Q70EL1 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC21.31■■□□□ 1
USP54Q70EL1 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC21.31■■□□□ 1
USP54Q70EL1 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC21.31■■□□□ 1
USP54Q70EL1 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC21.31■■□□□ 1
USP54Q70EL1 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
USP54Q70EL1 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms