Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
VPS13CQ709C8 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
VPS13CQ709C8 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
VPS13CQ709C8 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
VPS13CQ709C8 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
VPS13CQ709C8 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
VPS13CQ709C8 GPAA1P2-202ENST00000606848 1787 ntBASIC13.4□□□□□ -0.26
VPS13CQ709C8 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
VPS13CQ709C8 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
VPS13CQ709C8 DEK-201ENST00000244776 1441 ntTSL 2 BASIC13.4□□□□□ -0.26
VPS13CQ709C8 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
VPS13CQ709C8 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC13.4□□□□□ -0.26
VPS13CQ709C8 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
VPS13CQ709C8 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.27
VPS13CQ709C8 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
VPS13CQ709C8 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.27
VPS13CQ709C8 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC13.4□□□□□ -0.27
VPS13CQ709C8 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC13.4□□□□□ -0.27
VPS13CQ709C8 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC13.4□□□□□ -0.27
VPS13CQ709C8 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC13.4□□□□□ -0.27
VPS13CQ709C8 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13CQ709C8 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC13.39□□□□□ -0.27
VPS13CQ709C8 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13CQ709C8 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13CQ709C8 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13CQ709C8 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13CQ709C8 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC13.39□□□□□ -0.27
VPS13CQ709C8 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC13.39□□□□□ -0.27
VPS13CQ709C8 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13CQ709C8 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13CQ709C8 AL645608.8-201ENST00000606034 2086 ntBASIC13.39□□□□□ -0.27
VPS13CQ709C8 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13CQ709C8 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13CQ709C8 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
VPS13CQ709C8 GGCT-203ENST00000409144 836 ntTSL 2 BASIC13.39□□□□□ -0.27
VPS13CQ709C8 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC13.39□□□□□ -0.27
VPS13CQ709C8 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC13.39□□□□□ -0.27
VPS13CQ709C8 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13CQ709C8 HNRNPA1P13-201ENST00000510646 963 ntBASIC13.39□□□□□ -0.27
VPS13CQ709C8 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC13.39□□□□□ -0.27
VPS13CQ709C8 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13CQ709C8 AC015967.2-201ENST00000624092 234 ntBASIC13.39□□□□□ -0.27
VPS13CQ709C8 AC006435.4-201ENST00000625037 234 ntBASIC13.39□□□□□ -0.27
VPS13CQ709C8 AL356737.1-201ENST00000634391 234 ntBASIC13.39□□□□□ -0.27
VPS13CQ709C8 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13CQ709C8 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
VPS13CQ709C8 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13CQ709C8 LOX-206ENST00000639739 1626 ntTSL 5 BASIC13.39□□□□□ -0.27
VPS13CQ709C8 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13CQ709C8 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC13.39□□□□□ -0.27
VPS13CQ709C8 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13CQ709C8 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
VPS13CQ709C8 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC13.39□□□□□ -0.27
VPS13CQ709C8 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
VPS13CQ709C8 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC13.39□□□□□ -0.27
VPS13CQ709C8 WDR53-204ENST00000433160 887 ntTSL 5 BASIC13.39□□□□□ -0.27
VPS13CQ709C8 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13CQ709C8 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC13.39□□□□□ -0.27
VPS13CQ709C8 LINC01115-203ENST00000606068 577 ntBASIC13.39□□□□□ -0.27
VPS13CQ709C8 AC128714.1-201ENST00000637035 887 ntBASIC13.39□□□□□ -0.27
VPS13CQ709C8 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
VPS13CQ709C8 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13CQ709C8 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC13.39□□□□□ -0.27
VPS13CQ709C8 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13CQ709C8 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC13.39□□□□□ -0.27
VPS13CQ709C8 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
VPS13CQ709C8 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13CQ709C8 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13CQ709C8 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13CQ709C8 LINC02012-201ENST00000608206 1725 ntBASIC13.39□□□□□ -0.27
VPS13CQ709C8 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13CQ709C8 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13CQ709C8 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC13.39□□□□□ -0.27
VPS13CQ709C8 CLUHP6-201ENST00000580789 941 ntBASIC13.39□□□□□ -0.27
VPS13CQ709C8 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC13.39□□□□□ -0.27
VPS13CQ709C8 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
VPS13CQ709C8 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS13CQ709C8 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
VPS13CQ709C8 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC13.38□□□□□ -0.27
VPS13CQ709C8 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC13.38□□□□□ -0.27
VPS13CQ709C8 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC13.38□□□□□ -0.27
VPS13CQ709C8 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS13CQ709C8 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS13CQ709C8 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS13CQ709C8 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS13CQ709C8 MIR326-201ENST00000362220 95 ntBASIC13.38□□□□□ -0.27
VPS13CQ709C8 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC13.38□□□□□ -0.27
VPS13CQ709C8 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC13.38□□□□□ -0.27
VPS13CQ709C8 AL359711.2-201ENST00000563105 872 ntBASIC13.38□□□□□ -0.27
VPS13CQ709C8 ATF5-205ENST00000600336 682 ntTSL 2 BASIC13.38□□□□□ -0.27
VPS13CQ709C8 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC13.38□□□□□ -0.27
VPS13CQ709C8 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
VPS13CQ709C8 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC13.38□□□□□ -0.27
VPS13CQ709C8 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC13.38□□□□□ -0.27
VPS13CQ709C8 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
VPS13CQ709C8 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC13.38□□□□□ -0.27
VPS13CQ709C8 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC13.38□□□□□ -0.27
VPS13CQ709C8 AC036164.1-201ENST00000570544 333 ntBASIC13.38□□□□□ -0.27
VPS13CQ709C8 MIR4706-201ENST00000582134 82 ntBASIC13.38□□□□□ -0.27
VPS13CQ709C8 AC005702.4-201ENST00000618393 416 ntBASIC13.38□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms