Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.2■□□□□ 0.34
RNF43Q68DV7 AC084121.4-201ENST00000641598 221 ntBASIC17.2■□□□□ 0.34
RNF43Q68DV7 AF228730.8-201ENST00000642140 221 ntBASIC17.2■□□□□ 0.34
RNF43Q68DV7 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.2■□□□□ 0.34
RNF43Q68DV7 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF43Q68DV7 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF43Q68DV7 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.2■□□□□ 0.34
RNF43Q68DV7 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF43Q68DV7 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RNF43Q68DV7 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.2■□□□□ 0.34
RNF43Q68DV7 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.2■□□□□ 0.34
RNF43Q68DV7 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF43Q68DV7 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF43Q68DV7 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF43Q68DV7 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RNF43Q68DV7 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF43Q68DV7 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
RNF43Q68DV7 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF43Q68DV7 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RNF43Q68DV7 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.2■□□□□ 0.34
RNF43Q68DV7 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.2■□□□□ 0.34
RNF43Q68DV7 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF43Q68DV7 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF43Q68DV7 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RNF43Q68DV7 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC17.19■□□□□ 0.34
RNF43Q68DV7 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF43Q68DV7 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF43Q68DV7 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.19■□□□□ 0.34
RNF43Q68DV7 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF43Q68DV7 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF43Q68DV7 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.19■□□□□ 0.34
RNF43Q68DV7 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF43Q68DV7 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF43Q68DV7 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
RNF43Q68DV7 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF43Q68DV7 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RNF43Q68DV7 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF43Q68DV7 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
RNF43Q68DV7 AC015922.1-201ENST00000421102 1152 ntBASIC17.19■□□□□ 0.34
RNF43Q68DV7 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC17.19■□□□□ 0.34
RNF43Q68DV7 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.19■□□□□ 0.34
RNF43Q68DV7 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RNF43Q68DV7 RN7SL589P-201ENST00000481268 310 ntBASIC17.19■□□□□ 0.34
RNF43Q68DV7 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC17.19■□□□□ 0.34
RNF43Q68DV7 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
RNF43Q68DV7 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.19■□□□□ 0.34
RNF43Q68DV7 AC093214.1-201ENST00000511688 1107 ntBASIC17.19■□□□□ 0.34
RNF43Q68DV7 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.19■□□□□ 0.34
RNF43Q68DV7 AC093520.2-201ENST00000561830 333 ntBASIC17.19■□□□□ 0.34
RNF43Q68DV7 LINC01225-203ENST00000563550 1244 ntBASIC17.19■□□□□ 0.34
RNF43Q68DV7 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.19■□□□□ 0.34
RNF43Q68DV7 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
RNF43Q68DV7 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.19■□□□□ 0.34
RNF43Q68DV7 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC17.19■□□□□ 0.34
RNF43Q68DV7 Z92544.3-201ENST00000624747 417 ntBASIC17.19■□□□□ 0.34
RNF43Q68DV7 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.19■□□□□ 0.34
RNF43Q68DV7 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
RNF43Q68DV7 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF43Q68DV7 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
RNF43Q68DV7 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF43Q68DV7 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.19■□□□□ 0.34
RNF43Q68DV7 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF43Q68DV7 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
RNF43Q68DV7 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF43Q68DV7 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RNF43Q68DV7 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF43Q68DV7 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RNF43Q68DV7 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF43Q68DV7 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF43Q68DV7 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RNF43Q68DV7 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
RNF43Q68DV7 AC006277.1-201ENST00000624348 1610 ntBASIC17.18■□□□□ 0.34
RNF43Q68DV7 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.18■□□□□ 0.34
RNF43Q68DV7 HYMAI-201ENST00000635591 3347 ntBASIC17.18■□□□□ 0.34
RNF43Q68DV7 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
RNF43Q68DV7 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF43Q68DV7 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.18■□□□□ 0.34
RNF43Q68DV7 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF43Q68DV7 COPE-202ENST00000349893 948 ntTSL 2 BASIC17.18■□□□□ 0.34
RNF43Q68DV7 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF43Q68DV7 GK-202ENST00000378941 458 ntTSL 3 BASIC17.18■□□□□ 0.34
RNF43Q68DV7 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF43Q68DV7 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.18■□□□□ 0.34
RNF43Q68DV7 TFAMP1-201ENST00000412727 736 ntBASIC17.18■□□□□ 0.34
RNF43Q68DV7 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.18■□□□□ 0.34
RNF43Q68DV7 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC17.18■□□□□ 0.34
RNF43Q68DV7 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.18■□□□□ 0.34
RNF43Q68DV7 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
RNF43Q68DV7 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.18■□□□□ 0.34
RNF43Q68DV7 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.18■□□□□ 0.34
RNF43Q68DV7 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC17.18■□□□□ 0.34
RNF43Q68DV7 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF43Q68DV7 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.18■□□□□ 0.34
RNF43Q68DV7 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.18■□□□□ 0.34
RNF43Q68DV7 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF43Q68DV7 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RNF43Q68DV7 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RNF43Q68DV7 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RNF43Q68DV7 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF43Q68DV7 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms