Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.12■□□□□ 0.33
HDAC4P56524 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
HDAC4P56524 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC4P56524 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
HDAC4P56524 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.12■□□□□ 0.33
HDAC4P56524 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
HDAC4P56524 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC4P56524 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC4P56524 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC4P56524 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC4P56524 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC4P56524 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC4P56524 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC4P56524 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC4P56524 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
HDAC4P56524 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC4P56524 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC4P56524 AC026691.1-201ENST00000602502 2017 ntBASIC17.11■□□□□ 0.33
HDAC4P56524 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC4P56524 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC4P56524 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC4P56524 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC4P56524 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC4P56524 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC4P56524 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC4P56524 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.11■□□□□ 0.33
HDAC4P56524 TFAMP1-201ENST00000412727 736 ntBASIC17.11■□□□□ 0.33
HDAC4P56524 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.11■□□□□ 0.33
HDAC4P56524 HTR5BP-201ENST00000430851 1154 ntBASIC17.11■□□□□ 0.33
HDAC4P56524 MKNK2P1-201ENST00000437526 628 ntBASIC17.11■□□□□ 0.33
HDAC4P56524 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC4P56524 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC4P56524 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.11■□□□□ 0.33
HDAC4P56524 AL138918.1-201ENST00000568306 659 ntBASIC17.11■□□□□ 0.33
HDAC4P56524 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.11■□□□□ 0.33
HDAC4P56524 AKAP8P1-201ENST00000434743 1349 ntBASIC17.11■□□□□ 0.33
HDAC4P56524 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
HDAC4P56524 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC4P56524 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC4P56524 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC4P56524 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.11■□□□□ 0.33
HDAC4P56524 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC4P56524 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC4P56524 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC4P56524 AL592424.1-201ENST00000563624 1536 ntBASIC17.11■□□□□ 0.33
HDAC4P56524 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.11■□□□□ 0.33
HDAC4P56524 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
HDAC4P56524 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.1■□□□□ 0.33
HDAC4P56524 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HDAC4P56524 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
HDAC4P56524 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
HDAC4P56524 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HDAC4P56524 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC17.1■□□□□ 0.33
HDAC4P56524 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.1■□□□□ 0.33
HDAC4P56524 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.1■□□□□ 0.33
HDAC4P56524 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.1■□□□□ 0.33
HDAC4P56524 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HDAC4P56524 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC17.1■□□□□ 0.33
HDAC4P56524 PRYP6-201ENST00000514804 343 ntBASIC17.1■□□□□ 0.33
HDAC4P56524 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.1■□□□□ 0.33
HDAC4P56524 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
HDAC4P56524 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.1■□□□□ 0.33
HDAC4P56524 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HDAC4P56524 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.1■□□□□ 0.33
HDAC4P56524 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.1■□□□□ 0.33
HDAC4P56524 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.1■□□□□ 0.33
HDAC4P56524 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.1■□□□□ 0.33
HDAC4P56524 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HDAC4P56524 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC17.1■□□□□ 0.33
HDAC4P56524 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.1■□□□□ 0.33
HDAC4P56524 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
HDAC4P56524 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
HDAC4P56524 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HDAC4P56524 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
HDAC4P56524 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC4P56524 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms