Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VCPP55072 FER1L4-210ENST00000615531 5998 ntBASIC17.54■□□□□ 0.4
VCPP55072 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCPP55072 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCPP55072 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCPP55072 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
VCPP55072 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.54■□□□□ 0.4
VCPP55072 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCPP55072 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCPP55072 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCPP55072 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC17.54■□□□□ 0.4
VCPP55072 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VCPP55072 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC17.54■□□□□ 0.4
VCPP55072 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
VCPP55072 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC17.54■□□□□ 0.4
VCPP55072 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC17.54■□□□□ 0.4
VCPP55072 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC17.54■□□□□ 0.4
VCPP55072 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC17.54■□□□□ 0.4
VCPP55072 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.54■□□□□ 0.4
VCPP55072 HILS1-202ENST00000545329 423 ntBASIC17.54■□□□□ 0.4
VCPP55072 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.54■□□□□ 0.4
VCPP55072 AC026150.2-201ENST00000564693 1156 ntBASIC17.54■□□□□ 0.4
VCPP55072 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC17.54■□□□□ 0.4
VCPP55072 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VCPP55072 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCPP55072 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCPP55072 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCPP55072 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.54■□□□□ 0.4
VCPP55072 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VCPP55072 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VCPP55072 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCPP55072 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VCPP55072 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCPP55072 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCPP55072 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
VCPP55072 LINC00895-201ENST00000629028 1637 ntBASIC17.54■□□□□ 0.4
VCPP55072 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCPP55072 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCPP55072 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCPP55072 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VCPP55072 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCPP55072 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VCPP55072 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCPP55072 AC079328.2-201ENST00000561241 3354 ntBASIC17.53■□□□□ 0.4
VCPP55072 AC129492.6-201ENST00000611383 1305 ntBASIC17.53■□□□□ 0.4
VCPP55072 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VCPP55072 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.53■□□□□ 0.4
VCPP55072 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCPP55072 AC008894.3-201ENST00000624324 3103 ntBASIC17.53■□□□□ 0.4
VCPP55072 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCPP55072 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VCPP55072 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCPP55072 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCPP55072 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCPP55072 GPR53P-205ENST00000457298 1084 ntBASIC17.53■□□□□ 0.4
VCPP55072 RN7SL589P-201ENST00000481268 310 ntBASIC17.53■□□□□ 0.4
VCPP55072 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
VCPP55072 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC17.53■□□□□ 0.4
VCPP55072 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
VCPP55072 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC17.53■□□□□ 0.4
VCPP55072 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCPP55072 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCPP55072 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.53■□□□□ 0.4
VCPP55072 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VCPP55072 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.53■□□□□ 0.4
VCPP55072 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VCPP55072 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
VCPP55072 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCPP55072 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VCPP55072 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.53■□□□□ 0.4
VCPP55072 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VCPP55072 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
VCPP55072 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VCPP55072 CYP2T1P-202ENST00000641596 2535 ntBASIC17.53■□□□□ 0.4
VCPP55072 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCPP55072 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
VCPP55072 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
VCPP55072 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VCPP55072 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCPP55072 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VCPP55072 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
VCPP55072 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
VCPP55072 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VCPP55072 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.52■□□□□ 0.4
VCPP55072 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.52■□□□□ 0.4
VCPP55072 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
VCPP55072 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
VCPP55072 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
VCPP55072 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VCPP55072 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VCPP55072 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VCPP55072 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VCPP55072 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC17.52■□□□□ 0.4
VCPP55072 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC17.52■□□□□ 0.4
VCPP55072 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC17.52■□□□□ 0.4
VCPP55072 SPDYE14P-201ENST00000442619 822 ntBASIC17.52■□□□□ 0.4
VCPP55072 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC17.52■□□□□ 0.4
VCPP55072 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VCPP55072 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC17.52■□□□□ 0.4
VCPP55072 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms