Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AL442647.2-201ENST00000429864 857 ntBASIC18.85■□□□□ 0.61
CTCFP49711 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC18.85■□□□□ 0.61
CTCFP49711 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CTCFP49711 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC18.85■□□□□ 0.61
CTCFP49711 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC18.85■□□□□ 0.61
CTCFP49711 KC6-205ENST00000599934 556 ntTSL 4 BASIC18.85■□□□□ 0.61
CTCFP49711 RHOXF1P1-202ENST00000635473 501 ntBASIC18.85■□□□□ 0.61
CTCFP49711 AC008687.7-202ENST00000637404 953 ntBASIC18.85■□□□□ 0.61
CTCFP49711 AC138627.1-207ENST00000641560 1006 ntBASIC18.85■□□□□ 0.61
CTCFP49711 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTCFP49711 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTCFP49711 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTCFP49711 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.85■□□□□ 0.61
CTCFP49711 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTCFP49711 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTCFP49711 HTR7P1-202ENST00000624664 4411 ntBASIC18.85■□□□□ 0.61
CTCFP49711 PRORSD1P-202ENST00000563365 2154 ntBASIC18.85■□□□□ 0.61
CTCFP49711 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTCFP49711 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
CTCFP49711 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CTCFP49711 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTCFP49711 AL096828.2-201ENST00000567259 1965 ntBASIC18.84■□□□□ 0.61
CTCFP49711 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC18.84■□□□□ 0.61
CTCFP49711 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
CTCFP49711 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC18.84■□□□□ 0.61
CTCFP49711 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
CTCFP49711 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTCFP49711 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTCFP49711 AC073439.1-201ENST00000624121 1774 ntBASIC18.84■□□□□ 0.61
CTCFP49711 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTCFP49711 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
CTCFP49711 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTCFP49711 MPV17-204ENST00000399052 749 ntTSL 4 BASIC18.84■□□□□ 0.61
CTCFP49711 OLR1-203ENST00000432556 950 ntTSL 2 BASIC18.84■□□□□ 0.61
CTCFP49711 AC016694.1-201ENST00000434179 700 ntBASIC18.84■□□□□ 0.61
CTCFP49711 FTLP1-201ENST00000449155 526 ntBASIC18.84■□□□□ 0.61
CTCFP49711 FTH1P14-201ENST00000482930 551 ntBASIC18.84■□□□□ 0.61
CTCFP49711 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CTCFP49711 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTCFP49711 CHMP4BP1-201ENST00000556017 588 ntBASIC18.84■□□□□ 0.61
CTCFP49711 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC18.84■□□□□ 0.61
CTCFP49711 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTCFP49711 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC18.84■□□□□ 0.61
CTCFP49711 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC18.84■□□□□ 0.61
CTCFP49711 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC18.84■□□□□ 0.61
CTCFP49711 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTCFP49711 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC18.84■□□□□ 0.61
CTCFP49711 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTCFP49711 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC18.84■□□□□ 0.61
CTCFP49711 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTCFP49711 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
CTCFP49711 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTCFP49711 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.84■□□□□ 0.61
CTCFP49711 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTCFP49711 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CTCFP49711 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
CTCFP49711 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTCFP49711 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTCFP49711 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CTCFP49711 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC18.84■□□□□ 0.61
CTCFP49711 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CTCFP49711 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CTCFP49711 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.83■□□□□ 0.61
CTCFP49711 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.83■□□□□ 0.61
CTCFP49711 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CTCFP49711 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.83■□□□□ 0.61
CTCFP49711 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC18.83■□□□□ 0.61
CTCFP49711 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.83■□□□□ 0.61
CTCFP49711 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CTCFP49711 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
CTCFP49711 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.83■□□□□ 0.61
CTCFP49711 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CTCFP49711 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CTCFP49711 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.83■□□□□ 0.61
CTCFP49711 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.83■□□□□ 0.61
CTCFP49711 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CTCFP49711 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CTCFP49711 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CTCFP49711 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
CTCFP49711 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CTCFP49711 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC18.83■□□□□ 0.6
CTCFP49711 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
CTCFP49711 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC18.83■□□□□ 0.6
CTCFP49711 AC004898.1-201ENST00000451057 766 ntBASIC18.83■□□□□ 0.6
CTCFP49711 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC18.83■□□□□ 0.6
CTCFP49711 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC18.83■□□□□ 0.6
CTCFP49711 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC18.83■□□□□ 0.6
CTCFP49711 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC18.83■□□□□ 0.6
CTCFP49711 AL139327.4-201ENST00000612362 153 ntBASIC18.83■□□□□ 0.6
CTCFP49711 CASP16P-204ENST00000635032 809 ntBASIC18.83■□□□□ 0.6
CTCFP49711 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
CTCFP49711 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.6
CTCFP49711 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
CTCFP49711 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC18.83■□□□□ 0.6
CTCFP49711 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC18.83■□□□□ 0.6
CTCFP49711 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CTCFP49711 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CTCFP49711 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CTCFP49711 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CTCFP49711 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms