Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC15.46■□□□□ 0.07
SOX3P41225 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SOX3P41225 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.46■□□□□ 0.07
SOX3P41225 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SOX3P41225 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
SOX3P41225 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
SOX3P41225 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
SOX3P41225 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.06
SOX3P41225 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.46■□□□□ 0.06
SOX3P41225 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
SOX3P41225 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
SOX3P41225 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SOX3P41225 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
SOX3P41225 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SOX3P41225 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC15.45■□□□□ 0.06
SOX3P41225 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SOX3P41225 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
SOX3P41225 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.45■□□□□ 0.06
SOX3P41225 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
SOX3P41225 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
SOX3P41225 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SOX3P41225 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SOX3P41225 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC15.45■□□□□ 0.06
SOX3P41225 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SOX3P41225 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC15.45■□□□□ 0.06
SOX3P41225 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SOX3P41225 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SOX3P41225 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SOX3P41225 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SOX3P41225 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SOX3P41225 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.45■□□□□ 0.06
SOX3P41225 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC15.45■□□□□ 0.06
SOX3P41225 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SOX3P41225 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
SOX3P41225 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.45■□□□□ 0.06
SOX3P41225 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC15.45■□□□□ 0.06
SOX3P41225 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC15.45■□□□□ 0.06
SOX3P41225 SNHG9-202ENST00000564014 471 ntBASIC15.45■□□□□ 0.06
SOX3P41225 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
SOX3P41225 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.45■□□□□ 0.06
SOX3P41225 MIR4492-201ENST00000581627 80 ntBASIC15.45■□□□□ 0.06
SOX3P41225 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
SOX3P41225 AC099522.2-201ENST00000607001 744 ntBASIC15.45■□□□□ 0.06
SOX3P41225 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SOX3P41225 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
SOX3P41225 NFIC-211ENST00000641145 8399 ntBASIC15.45■□□□□ 0.06
SOX3P41225 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
SOX3P41225 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC15.45■□□□□ 0.06
SOX3P41225 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.45■□□□□ 0.06
SOX3P41225 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
SOX3P41225 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.45■□□□□ 0.06
SOX3P41225 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC15.45■□□□□ 0.06
SOX3P41225 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SOX3P41225 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.45■□□□□ 0.06
SOX3P41225 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SOX3P41225 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
SOX3P41225 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SOX3P41225 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC15.45■□□□□ 0.06
SOX3P41225 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.44■□□□□ 0.06
SOX3P41225 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.44■□□□□ 0.06
SOX3P41225 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
SOX3P41225 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC15.44■□□□□ 0.06
SOX3P41225 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SOX3P41225 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SOX3P41225 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC15.44■□□□□ 0.06
SOX3P41225 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
SOX3P41225 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
SOX3P41225 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
SOX3P41225 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC15.44■□□□□ 0.06
SOX3P41225 RNU1-129P-201ENST00000384064 167 ntBASIC15.44■□□□□ 0.06
SOX3P41225 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SOX3P41225 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.44■□□□□ 0.06
SOX3P41225 AC254562.1-201ENST00000417586 456 ntBASIC15.44■□□□□ 0.06
SOX3P41225 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC15.44■□□□□ 0.06
SOX3P41225 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SOX3P41225 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC15.44■□□□□ 0.06
SOX3P41225 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15.44■□□□□ 0.06
SOX3P41225 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.44■□□□□ 0.06
SOX3P41225 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.44■□□□□ 0.06
SOX3P41225 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC15.44■□□□□ 0.06
SOX3P41225 U1.21-201ENST00000580816 167 ntBASIC15.44■□□□□ 0.06
SOX3P41225 AL009183.1-201ENST00000603760 355 ntBASIC15.44■□□□□ 0.06
SOX3P41225 AL031055.1-201ENST00000606362 631 ntBASIC15.44■□□□□ 0.06
SOX3P41225 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
SOX3P41225 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SOX3P41225 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SOX3P41225 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SOX3P41225 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SOX3P41225 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SOX3P41225 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
SOX3P41225 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SOX3P41225 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
SOX3P41225 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SOX3P41225 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.44■□□□□ 0.06
SOX3P41225 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
SOX3P41225 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SOX3P41225 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SOX3P41225 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.44■□□□□ 0.06
SOX3P41225 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.44■□□□□ 0.06
SOX3P41225 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms