Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
BRCA1P38398 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
BRCA1P38398 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC19.47■□□□□ 0.71
BRCA1P38398 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC19.47■□□□□ 0.71
BRCA1P38398 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
BRCA1P38398 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
BRCA1P38398 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC19.47■□□□□ 0.71
BRCA1P38398 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
BRCA1P38398 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC19.47■□□□□ 0.71
BRCA1P38398 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
BRCA1P38398 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
BRCA1P38398 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC19.47■□□□□ 0.71
BRCA1P38398 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC19.47■□□□□ 0.71
BRCA1P38398 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
BRCA1P38398 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC19.47■□□□□ 0.71
BRCA1P38398 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
BRCA1P38398 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
BRCA1P38398 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
BRCA1P38398 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
BRCA1P38398 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC19.46■□□□□ 0.71
BRCA1P38398 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
BRCA1P38398 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
BRCA1P38398 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
BRCA1P38398 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
BRCA1P38398 LBH-202ENST00000401506 485 ntTSL 3 BASIC19.46■□□□□ 0.71
BRCA1P38398 ACTBP8-201ENST00000403258 1108 ntBASIC19.46■□□□□ 0.71
BRCA1P38398 HLA-DQB2-229ENST00000411527 1059 ntBASIC19.46■□□□□ 0.71
BRCA1P38398 AC007274.2-201ENST00000421675 662 ntBASIC19.46■□□□□ 0.71
BRCA1P38398 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC19.46■□□□□ 0.71
BRCA1P38398 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC19.46■□□□□ 0.71
BRCA1P38398 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC19.46■□□□□ 0.71
BRCA1P38398 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC19.46■□□□□ 0.71
BRCA1P38398 AC243562.2-201ENST00000561247 970 ntBASIC19.46■□□□□ 0.71
BRCA1P38398 NAT9-222ENST00000583476 583 ntTSL 3 BASIC19.46■□□□□ 0.71
BRCA1P38398 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
BRCA1P38398 AP003419.4-201ENST00000616071 517 ntBASIC19.46■□□□□ 0.71
BRCA1P38398 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
BRCA1P38398 AL603756.1-201ENST00000606511 2163 ntBASIC19.46■□□□□ 0.71
BRCA1P38398 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC19.46■□□□□ 0.71
BRCA1P38398 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC19.46■□□□□ 0.71
BRCA1P38398 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
BRCA1P38398 VILL-207ENST00000465644 1857 ntTSL 5 BASIC19.46■□□□□ 0.71
BRCA1P38398 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
BRCA1P38398 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
BRCA1P38398 TP73-209ENST00000603362 1668 ntTSL 5 BASIC19.46■□□□□ 0.71
BRCA1P38398 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
BRCA1P38398 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
BRCA1P38398 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
BRCA1P38398 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
BRCA1P38398 MPV17-204ENST00000399052 749 ntTSL 4 BASIC19.45■□□□□ 0.7
BRCA1P38398 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
BRCA1P38398 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC19.45■□□□□ 0.7
BRCA1P38398 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
BRCA1P38398 FNTAP2-201ENST00000430308 634 ntBASIC19.45■□□□□ 0.7
BRCA1P38398 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC19.45■□□□□ 0.7
BRCA1P38398 AC245884.6-201ENST00000515672 1067 ntBASIC19.45■□□□□ 0.7
BRCA1P38398 AC023310.1-201ENST00000554836 735 ntBASIC19.45■□□□□ 0.7
BRCA1P38398 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
BRCA1P38398 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
BRCA1P38398 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC19.45■□□□□ 0.7
BRCA1P38398 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC19.45■□□□□ 0.7
BRCA1P38398 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRCA1P38398 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRCA1P38398 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRCA1P38398 AC005622.1-201ENST00000636801 1703 ntBASIC19.45■□□□□ 0.7
BRCA1P38398 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
BRCA1P38398 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.45■□□□□ 0.7
BRCA1P38398 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC19.45■□□□□ 0.7
BRCA1P38398 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC19.45■□□□□ 0.7
BRCA1P38398 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRCA1P38398 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
BRCA1P38398 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.45■□□□□ 0.7
BRCA1P38398 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
BRCA1P38398 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRCA1P38398 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRCA1P38398 AC016700.1-201ENST00000429424 312 ntBASIC19.45■□□□□ 0.7
BRCA1P38398 AC044849.1-201ENST00000519737 1188 ntBASIC19.45■□□□□ 0.7
BRCA1P38398 KLK3-207ENST00000595952 969 ntTSL 3 BASIC19.45■□□□□ 0.7
BRCA1P38398 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC19.45■□□□□ 0.7
BRCA1P38398 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRCA1P38398 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
BRCA1P38398 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC19.45■□□□□ 0.7
BRCA1P38398 LETM1P2-201ENST00000597330 2178 ntBASIC19.44■□□□□ 0.7
BRCA1P38398 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRCA1P38398 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC19.44■□□□□ 0.7
BRCA1P38398 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRCA1P38398 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.44■□□□□ 0.7
BRCA1P38398 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
BRCA1P38398 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC19.44■□□□□ 0.7
BRCA1P38398 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRCA1P38398 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRCA1P38398 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC19.44■□□□□ 0.7
BRCA1P38398 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
BRCA1P38398 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
BRCA1P38398 CFL1-214ENST00000534769 758 ntTSL 2 BASIC19.44■□□□□ 0.7
BRCA1P38398 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC19.44■□□□□ 0.7
BRCA1P38398 FGFR3P5-201ENST00000564496 886 ntBASIC19.44■□□□□ 0.7
BRCA1P38398 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
BRCA1P38398 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
BRCA1P38398 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms