Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC12.68□□□□□ -0.38
HOXD3P31249 GGT4P-201ENST00000623672 1708 ntBASIC12.68□□□□□ -0.38
HOXD3P31249 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC12.68□□□□□ -0.38
HOXD3P31249 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
HOXD3P31249 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC12.68□□□□□ -0.38
HOXD3P31249 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC12.68□□□□□ -0.38
HOXD3P31249 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC12.68□□□□□ -0.38
HOXD3P31249 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
HOXD3P31249 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC12.68□□□□□ -0.38
HOXD3P31249 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC12.68□□□□□ -0.38
HOXD3P31249 SPDYE7P-202ENST00000420373 878 ntBASIC12.68□□□□□ -0.38
HOXD3P31249 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC12.68□□□□□ -0.38
HOXD3P31249 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC12.68□□□□□ -0.38
HOXD3P31249 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC12.68□□□□□ -0.38
HOXD3P31249 PRYP6-201ENST00000514804 343 ntBASIC12.68□□□□□ -0.38
HOXD3P31249 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC12.68□□□□□ -0.38
HOXD3P31249 QPRT-203ENST00000562473 579 ntTSL 3 BASIC12.68□□□□□ -0.38
HOXD3P31249 AC140878.1-201ENST00000565277 250 ntBASIC12.68□□□□□ -0.38
HOXD3P31249 PRR29-209ENST00000582540 967 ntTSL 2 BASIC12.68□□□□□ -0.38
HOXD3P31249 AC027307.2-201ENST00000591252 911 ntBASIC12.68□□□□□ -0.38
HOXD3P31249 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC12.68□□□□□ -0.38
HOXD3P31249 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
HOXD3P31249 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
HOXD3P31249 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
HOXD3P31249 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC12.67□□□□□ -0.38
HOXD3P31249 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HOXD3P31249 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC12.67□□□□□ -0.38
HOXD3P31249 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC12.67□□□□□ -0.38
HOXD3P31249 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC12.67□□□□□ -0.38
HOXD3P31249 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXD3P31249 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXD3P31249 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC12.67□□□□□ -0.38
HOXD3P31249 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC12.67□□□□□ -0.38
HOXD3P31249 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXD3P31249 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HOXD3P31249 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC12.67□□□□□ -0.38
HOXD3P31249 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
HOXD3P31249 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXD3P31249 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXD3P31249 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
HOXD3P31249 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXD3P31249 MIR661-201ENST00000384842 89 ntBASIC12.67□□□□□ -0.38
HOXD3P31249 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC12.67□□□□□ -0.38
HOXD3P31249 RAC2-204ENST00000406508 893 ntTSL 5 BASIC12.67□□□□□ -0.38
HOXD3P31249 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC12.67□□□□□ -0.38
HOXD3P31249 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC12.67□□□□□ -0.38
HOXD3P31249 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC12.67□□□□□ -0.38
HOXD3P31249 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC12.67□□□□□ -0.38
HOXD3P31249 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC12.67□□□□□ -0.38
HOXD3P31249 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC12.67□□□□□ -0.38
HOXD3P31249 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC12.67□□□□□ -0.38
HOXD3P31249 LINC01225-203ENST00000563550 1244 ntBASIC12.67□□□□□ -0.38
HOXD3P31249 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC12.67□□□□□ -0.38
HOXD3P31249 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC12.67□□□□□ -0.38
HOXD3P31249 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC12.67□□□□□ -0.38
HOXD3P31249 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HOXD3P31249 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC12.67□□□□□ -0.38
HOXD3P31249 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HOXD3P31249 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HOXD3P31249 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HOXD3P31249 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
HOXD3P31249 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HOXD3P31249 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC12.67□□□□□ -0.38
HOXD3P31249 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HOXD3P31249 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC12.67□□□□□ -0.38
HOXD3P31249 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
HOXD3P31249 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXD3P31249 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC12.67□□□□□ -0.38
HOXD3P31249 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC12.67□□□□□ -0.38
HOXD3P31249 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXD3P31249 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXD3P31249 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HOXD3P31249 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
HOXD3P31249 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC12.66□□□□□ -0.38
HOXD3P31249 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC12.66□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms