Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL5A3P25940 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC20.19■□□□□ 0.82
COL5A3P25940 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL5A3P25940 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL5A3P25940 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC20.19■□□□□ 0.82
COL5A3P25940 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL5A3P25940 HAUS4P1-201ENST00000406739 1145 ntBASIC20.19■□□□□ 0.82
COL5A3P25940 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC20.19■□□□□ 0.82
COL5A3P25940 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC20.19■□□□□ 0.82
COL5A3P25940 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC20.19■□□□□ 0.82
COL5A3P25940 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC20.19■□□□□ 0.82
COL5A3P25940 CMC2-214ENST00000565925 640 ntTSL 5 BASIC20.19■□□□□ 0.82
COL5A3P25940 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
COL5A3P25940 AC134312.5-201ENST00000568031 1313 ntBASIC20.19■□□□□ 0.82
COL5A3P25940 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
COL5A3P25940 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A3P25940 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A3P25940 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A3P25940 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A3P25940 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A3P25940 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC20.18■□□□□ 0.82
COL5A3P25940 NF2-208ENST00000403435 2568 ntTSL 5 BASIC20.18■□□□□ 0.82
COL5A3P25940 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A3P25940 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A3P25940 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
COL5A3P25940 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A3P25940 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A3P25940 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A3P25940 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A3P25940 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A3P25940 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A3P25940 BRF1-202ENST00000379932 884 ntTSL 5 BASIC20.18■□□□□ 0.82
COL5A3P25940 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A3P25940 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC20.18■□□□□ 0.82
COL5A3P25940 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC20.18■□□□□ 0.82
COL5A3P25940 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC20.18■□□□□ 0.82
COL5A3P25940 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC20.18■□□□□ 0.82
COL5A3P25940 AC025279.2-201ENST00000569730 653 ntBASIC20.18■□□□□ 0.82
COL5A3P25940 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC20.18■□□□□ 0.82
COL5A3P25940 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC20.18■□□□□ 0.82
COL5A3P25940 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A3P25940 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A3P25940 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC20.18■□□□□ 0.82
COL5A3P25940 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A3P25940 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A3P25940 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
COL5A3P25940 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC20.18■□□□□ 0.82
COL5A3P25940 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC20.18■□□□□ 0.82
COL5A3P25940 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC20.18■□□□□ 0.82
COL5A3P25940 RNF216P1-203ENST00000404404 2427 ntBASIC20.17■□□□□ 0.82
COL5A3P25940 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL5A3P25940 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL5A3P25940 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC20.17■□□□□ 0.82
COL5A3P25940 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL5A3P25940 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
COL5A3P25940 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC20.17■□□□□ 0.82
COL5A3P25940 IFT20-206ENST00000578122 834 ntTSL 2 BASIC20.17■□□□□ 0.82
COL5A3P25940 IFT20-208ENST00000578985 831 ntTSL 3 BASIC20.17■□□□□ 0.82
COL5A3P25940 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC20.17■□□□□ 0.82
COL5A3P25940 KLK3-211ENST00000597483 810 ntTSL 2 BASIC20.17■□□□□ 0.82
COL5A3P25940 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL5A3P25940 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC20.17■□□□□ 0.82
COL5A3P25940 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL5A3P25940 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC20.17■□□□□ 0.82
COL5A3P25940 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL5A3P25940 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC20.17■□□□□ 0.82
COL5A3P25940 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC20.17■□□□□ 0.82
COL5A3P25940 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL5A3P25940 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
COL5A3P25940 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
COL5A3P25940 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC20.17■□□□□ 0.82
COL5A3P25940 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
COL5A3P25940 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL5A3P25940 AC134407.2-201ENST00000625089 1978 ntBASIC20.16■□□□□ 0.82
COL5A3P25940 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A3P25940 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC20.16■□□□□ 0.82
COL5A3P25940 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC20.16■□□□□ 0.82
COL5A3P25940 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
COL5A3P25940 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A3P25940 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A3P25940 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A3P25940 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A3P25940 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC20.16■□□□□ 0.82
COL5A3P25940 AC026410.3-201ENST00000514280 936 ntBASIC20.16■□□□□ 0.82
COL5A3P25940 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC20.16■□□□□ 0.82
COL5A3P25940 AP001063.1-201ENST00000568332 529 ntBASIC20.16■□□□□ 0.82
COL5A3P25940 AL450472.2-201ENST00000603663 1156 ntBASIC20.16■□□□□ 0.82
COL5A3P25940 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC20.16■□□□□ 0.82
COL5A3P25940 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A3P25940 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC20.16■□□□□ 0.82
COL5A3P25940 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC20.16■□□□□ 0.82
COL5A3P25940 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A3P25940 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC20.16■□□□□ 0.82
COL5A3P25940 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC20.16■□□□□ 0.82
COL5A3P25940 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A3P25940 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A3P25940 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
COL5A3P25940 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A3P25940 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A3P25940 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms