Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.19■□□□□ 0.34
PDGFRAP16234 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.19■□□□□ 0.34
PDGFRAP16234 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PDGFRAP16234 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
PDGFRAP16234 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
PDGFRAP16234 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC17.19■□□□□ 0.34
PDGFRAP16234 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.19■□□□□ 0.34
PDGFRAP16234 AC079781.4-201ENST00000641908 219 ntBASIC17.19■□□□□ 0.34
PDGFRAP16234 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC17.19■□□□□ 0.34
PDGFRAP16234 AL592424.1-201ENST00000563624 1536 ntBASIC17.19■□□□□ 0.34
PDGFRAP16234 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PDGFRAP16234 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
PDGFRAP16234 AL513523.2-202ENST00000427283 2040 ntBASIC17.19■□□□□ 0.34
PDGFRAP16234 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.19■□□□□ 0.34
PDGFRAP16234 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PDGFRAP16234 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
PDGFRAP16234 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PDGFRAP16234 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.19■□□□□ 0.34
PDGFRAP16234 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PDGFRAP16234 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.19■□□□□ 0.34
PDGFRAP16234 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PDGFRAP16234 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PDGFRAP16234 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
PDGFRAP16234 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.19■□□□□ 0.34
PDGFRAP16234 AKAP8P1-201ENST00000434743 1349 ntBASIC17.19■□□□□ 0.34
PDGFRAP16234 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PDGFRAP16234 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
PDGFRAP16234 RELA-227ENST00000615805 2236 ntTSL 5 BASIC17.19■□□□□ 0.34
PDGFRAP16234 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PDGFRAP16234 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
PDGFRAP16234 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
PDGFRAP16234 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC17.18■□□□□ 0.34
PDGFRAP16234 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.18■□□□□ 0.34
PDGFRAP16234 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
PDGFRAP16234 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
PDGFRAP16234 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
PDGFRAP16234 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PDGFRAP16234 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
PDGFRAP16234 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PDGFRAP16234 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PDGFRAP16234 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PDGFRAP16234 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC17.18■□□□□ 0.34
PDGFRAP16234 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.18■□□□□ 0.34
PDGFRAP16234 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
PDGFRAP16234 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PDGFRAP16234 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PDGFRAP16234 TFAMP1-201ENST00000412727 736 ntBASIC17.18■□□□□ 0.34
PDGFRAP16234 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC17.18■□□□□ 0.34
PDGFRAP16234 AP006288.1-201ENST00000446065 395 ntBASIC17.18■□□□□ 0.34
PDGFRAP16234 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.18■□□□□ 0.34
PDGFRAP16234 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.18■□□□□ 0.34
PDGFRAP16234 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.18■□□□□ 0.34
PDGFRAP16234 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
PDGFRAP16234 FAM86C2P-203ENST00000528684 1004 ntBASIC17.18■□□□□ 0.34
PDGFRAP16234 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.18■□□□□ 0.34
PDGFRAP16234 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.18■□□□□ 0.34
PDGFRAP16234 AP001160.2-201ENST00000596071 487 ntBASIC17.18■□□□□ 0.34
PDGFRAP16234 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PDGFRAP16234 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
PDGFRAP16234 SP100-205ENST00000409824 1802 ntTSL 5 BASIC17.18■□□□□ 0.34
PDGFRAP16234 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
PDGFRAP16234 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PDGFRAP16234 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PDGFRAP16234 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
PDGFRAP16234 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC17.18■□□□□ 0.34
PDGFRAP16234 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PDGFRAP16234 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PDGFRAP16234 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PDGFRAP16234 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.18■□□□□ 0.34
PDGFRAP16234 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PDGFRAP16234 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PDGFRAP16234 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
PDGFRAP16234 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PDGFRAP16234 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PDGFRAP16234 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PDGFRAP16234 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
PDGFRAP16234 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
PDGFRAP16234 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PDGFRAP16234 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PDGFRAP16234 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
PDGFRAP16234 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PDGFRAP16234 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PDGFRAP16234 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC17.17■□□□□ 0.34
PDGFRAP16234 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PDGFRAP16234 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PDGFRAP16234 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PDGFRAP16234 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PDGFRAP16234 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PDGFRAP16234 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.17■□□□□ 0.34
PDGFRAP16234 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PDGFRAP16234 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.17■□□□□ 0.34
PDGFRAP16234 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PDGFRAP16234 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.17■□□□□ 0.34
PDGFRAP16234 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
PDGFRAP16234 PRYP6-201ENST00000514804 343 ntBASIC17.17■□□□□ 0.34
PDGFRAP16234 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.17■□□□□ 0.34
PDGFRAP16234 AL135744.1-201ENST00000565098 629 ntBASIC17.17■□□□□ 0.34
PDGFRAP16234 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
PDGFRAP16234 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.17■□□□□ 0.34
PDGFRAP16234 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms