Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC19.29■□□□□ 0.68
HMGB1P09429 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC19.29■□□□□ 0.68
HMGB1P09429 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
HMGB1P09429 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB1P09429 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
HMGB1P09429 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB1P09429 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB1P09429 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC19.29■□□□□ 0.68
HMGB1P09429 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB1P09429 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC19.29■□□□□ 0.68
HMGB1P09429 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB1P09429 YBX2P1-201ENST00000394192 760 ntBASIC19.29■□□□□ 0.68
HMGB1P09429 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB1P09429 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC19.29■□□□□ 0.68
HMGB1P09429 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC19.29■□□□□ 0.68
HMGB1P09429 MIR4321-201ENST00000592276 80 ntBASIC19.29■□□□□ 0.68
HMGB1P09429 AL671883.3-201ENST00000603274 991 ntBASIC19.29■□□□□ 0.68
HMGB1P09429 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB1P09429 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB1P09429 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB1P09429 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB1P09429 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB1P09429 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC19.29■□□□□ 0.68
HMGB1P09429 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB1P09429 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB1P09429 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
HMGB1P09429 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
HMGB1P09429 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
HMGB1P09429 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB1P09429 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
HMGB1P09429 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB1P09429 PGR-209ENST00000617858 2816 ntTSL 5 BASIC19.29■□□□□ 0.68
HMGB1P09429 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB1P09429 CDC14C-201ENST00000428251 1719 ntBASIC19.28■□□□□ 0.68
HMGB1P09429 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB1P09429 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB1P09429 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB1P09429 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
HMGB1P09429 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC19.28■□□□□ 0.68
HMGB1P09429 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC19.28■□□□□ 0.68
HMGB1P09429 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB1P09429 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC19.28■□□□□ 0.68
HMGB1P09429 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB1P09429 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB1P09429 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB1P09429 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC19.28■□□□□ 0.68
HMGB1P09429 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC19.28■□□□□ 0.68
HMGB1P09429 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC19.28■□□□□ 0.68
HMGB1P09429 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC19.28■□□□□ 0.68
HMGB1P09429 AL138918.1-201ENST00000568306 659 ntBASIC19.28■□□□□ 0.68
HMGB1P09429 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC19.28■□□□□ 0.68
HMGB1P09429 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
HMGB1P09429 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
HMGB1P09429 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC19.28■□□□□ 0.68
HMGB1P09429 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB1P09429 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB1P09429 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB1P09429 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB1P09429 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB1P09429 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB1P09429 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB1P09429 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB1P09429 AC069224.1-201ENST00000566372 1715 ntBASIC19.28■□□□□ 0.68
HMGB1P09429 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC19.28■□□□□ 0.68
HMGB1P09429 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB1P09429 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB1P09429 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC19.28■□□□□ 0.68
HMGB1P09429 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGB1P09429 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGB1P09429 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC19.27■□□□□ 0.68
HMGB1P09429 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC19.27■□□□□ 0.68
HMGB1P09429 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HMGB1P09429 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGB1P09429 LINC02447-202ENST00000501888 2146 ntBASIC19.27■□□□□ 0.68
HMGB1P09429 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
HMGB1P09429 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC19.27■□□□□ 0.68
HMGB1P09429 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGB1P09429 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGB1P09429 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
HMGB1P09429 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGB1P09429 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGB1P09429 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGB1P09429 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC19.27■□□□□ 0.68
HMGB1P09429 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC19.27■□□□□ 0.68
HMGB1P09429 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC19.27■□□□□ 0.68
HMGB1P09429 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC19.27■□□□□ 0.68
HMGB1P09429 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
HMGB1P09429 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC19.27■□□□□ 0.68
HMGB1P09429 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HMGB1P09429 AC026120.1-201ENST00000611536 926 ntBASIC19.27■□□□□ 0.68
HMGB1P09429 SPTSSB-204ENST00000617024 1292 ntBASIC19.27■□□□□ 0.68
HMGB1P09429 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
HMGB1P09429 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGB1P09429 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC19.27■□□□□ 0.68
HMGB1P09429 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGB1P09429 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGB1P09429 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGB1P09429 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HMGB1P09429 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
HMGB1P09429 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms