Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.91■□□□□ 0.14
LDLRP01130 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LDLRP01130 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
LDLRP01130 AL135999.2-201ENST00000622438 1686 ntBASIC15.91■□□□□ 0.14
LDLRP01130 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.91■□□□□ 0.14
LDLRP01130 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
LDLRP01130 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
LDLRP01130 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC15.91■□□□□ 0.14
LDLRP01130 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
LDLRP01130 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LDLRP01130 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
LDLRP01130 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
LDLRP01130 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.91■□□□□ 0.14
LDLRP01130 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
LDLRP01130 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
LDLRP01130 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC15.9■□□□□ 0.14
LDLRP01130 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
LDLRP01130 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
LDLRP01130 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.9■□□□□ 0.14
LDLRP01130 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
LDLRP01130 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.9■□□□□ 0.14
LDLRP01130 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 MIR770-201ENST00000390219 98 ntBASIC15.9■□□□□ 0.14
LDLRP01130 CTNS-203ENST00000399306 803 ntTSL 3 BASIC15.9■□□□□ 0.14
LDLRP01130 SYS1-203ENST00000414310 795 ntTSL 3 BASIC15.9■□□□□ 0.14
LDLRP01130 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
LDLRP01130 HLA-J-202ENST00000469281 1241 ntBASIC15.9■□□□□ 0.14
LDLRP01130 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC15.9■□□□□ 0.14
LDLRP01130 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 AC011467.4-201ENST00000594891 528 ntBASIC15.9■□□□□ 0.14
LDLRP01130 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC15.9■□□□□ 0.14
LDLRP01130 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC15.9■□□□□ 0.14
LDLRP01130 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
LDLRP01130 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.9■□□□□ 0.14
LDLRP01130 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
LDLRP01130 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 DBET-201ENST00000630918 3363 ntBASIC15.9■□□□□ 0.14
LDLRP01130 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
LDLRP01130 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 AC126177.1-201ENST00000547829 2218 ntBASIC15.9■□□□□ 0.14
LDLRP01130 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.9■□□□□ 0.14
LDLRP01130 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDLRP01130 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDLRP01130 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.89■□□□□ 0.13
LDLRP01130 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDLRP01130 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC15.89■□□□□ 0.13
LDLRP01130 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC15.89■□□□□ 0.13
LDLRP01130 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC15.89■□□□□ 0.13
LDLRP01130 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC15.89■□□□□ 0.13
LDLRP01130 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDLRP01130 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDLRP01130 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC15.89■□□□□ 0.13
LDLRP01130 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LDLRP01130 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDLRP01130 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.89■□□□□ 0.13
LDLRP01130 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC15.89■□□□□ 0.13
LDLRP01130 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LDLRP01130 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDLRP01130 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDLRP01130 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDLRP01130 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDLRP01130 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.89■□□□□ 0.13
LDLRP01130 CNN2P11-201ENST00000429351 262 ntBASIC15.89■□□□□ 0.13
LDLRP01130 AC007967.3-201ENST00000434308 558 ntBASIC15.89■□□□□ 0.13
LDLRP01130 SRP19-202ENST00000445150 833 ntTSL 2 BASIC15.89■□□□□ 0.13
LDLRP01130 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LDLRP01130 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.89■□□□□ 0.13
LDLRP01130 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC15.89■□□□□ 0.13
LDLRP01130 ALG1L5P-201ENST00000482043 771 ntBASIC15.89■□□□□ 0.13
LDLRP01130 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC15.89■□□□□ 0.13
LDLRP01130 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC15.89■□□□□ 0.13
LDLRP01130 AP002472.1-201ENST00000577490 586 ntBASIC15.89■□□□□ 0.13
LDLRP01130 STK25P1-201ENST00000585406 838 ntBASIC15.89■□□□□ 0.13
LDLRP01130 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.89■□□□□ 0.13
LDLRP01130 MIR1199-201ENST00000621445 119 ntBASIC15.89■□□□□ 0.13
LDLRP01130 PGM5P2-202ENST00000637225 1043 ntBASIC15.89■□□□□ 0.13
LDLRP01130 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LDLRP01130 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms