Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 SDHAP3-202ENST00000515467 728 ntBASIC16.59■□□□□ 0.25
HOXC11O43248 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC16.59■□□□□ 0.25
HOXC11O43248 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC16.59■□□□□ 0.25
HOXC11O43248 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC16.59■□□□□ 0.25
HOXC11O43248 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.59■□□□□ 0.25
HOXC11O43248 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC11O43248 MIR6069-201ENST00000620069 79 ntBASIC16.59■□□□□ 0.25
HOXC11O43248 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC11O43248 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
HOXC11O43248 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC11O43248 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC11O43248 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC11O43248 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
HOXC11O43248 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC11O43248 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
HOXC11O43248 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.59■□□□□ 0.25
HOXC11O43248 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC11O43248 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
HOXC11O43248 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC11O43248 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.59■□□□□ 0.25
HOXC11O43248 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
HOXC11O43248 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC11O43248 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC11O43248 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
HOXC11O43248 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
HOXC11O43248 RNF216P1-203ENST00000404404 2427 ntBASIC16.58■□□□□ 0.25
HOXC11O43248 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.58■□□□□ 0.25
HOXC11O43248 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
HOXC11O43248 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HOXC11O43248 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.24
HOXC11O43248 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HOXC11O43248 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HOXC11O43248 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HOXC11O43248 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HOXC11O43248 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HOXC11O43248 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HOXC11O43248 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HOXC11O43248 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HOXC11O43248 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
HOXC11O43248 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC16.58■□□□□ 0.24
HOXC11O43248 COX5BP8-201ENST00000416911 349 ntBASIC16.58■□□□□ 0.24
HOXC11O43248 NME2P1-201ENST00000426182 414 ntBASIC16.58■□□□□ 0.24
HOXC11O43248 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC16.58■□□□□ 0.24
HOXC11O43248 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HOXC11O43248 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.58■□□□□ 0.24
HOXC11O43248 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.58■□□□□ 0.24
HOXC11O43248 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC16.58■□□□□ 0.24
HOXC11O43248 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HOXC11O43248 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.58■□□□□ 0.24
HOXC11O43248 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.58■□□□□ 0.24
HOXC11O43248 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.58■□□□□ 0.24
HOXC11O43248 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
HOXC11O43248 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC16.58■□□□□ 0.24
HOXC11O43248 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HOXC11O43248 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HOXC11O43248 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.58■□□□□ 0.24
HOXC11O43248 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
HOXC11O43248 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.58■□□□□ 0.24
HOXC11O43248 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.58■□□□□ 0.24
HOXC11O43248 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.58■□□□□ 0.24
HOXC11O43248 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HOXC11O43248 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HOXC11O43248 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.58■□□□□ 0.24
HOXC11O43248 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HOXC11O43248 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
HOXC11O43248 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HOXC11O43248 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HOXC11O43248 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.57■□□□□ 0.24
HOXC11O43248 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
HOXC11O43248 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HOXC11O43248 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
HOXC11O43248 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HOXC11O43248 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HOXC11O43248 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HOXC11O43248 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.57■□□□□ 0.24
HOXC11O43248 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.57■□□□□ 0.24
HOXC11O43248 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.57■□□□□ 0.24
HOXC11O43248 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HOXC11O43248 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HOXC11O43248 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.57■□□□□ 0.24
HOXC11O43248 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
HOXC11O43248 AL391825.1-201ENST00000457671 1364 ntBASIC16.57■□□□□ 0.24
HOXC11O43248 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
HOXC11O43248 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC16.57■□□□□ 0.24
HOXC11O43248 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
HOXC11O43248 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HOXC11O43248 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HOXC11O43248 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HOXC11O43248 AC093004.1-201ENST00000508850 424 ntBASIC16.57■□□□□ 0.24
HOXC11O43248 DOC2GP-202ENST00000514950 1163 ntBASIC16.57■□□□□ 0.24
HOXC11O43248 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC16.57■□□□□ 0.24
HOXC11O43248 AC140912.1-201ENST00000577171 1054 ntBASIC16.57■□□□□ 0.24
HOXC11O43248 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.57■□□□□ 0.24
HOXC11O43248 AC004790.1-201ENST00000612686 536 ntBASIC16.57■□□□□ 0.24
HOXC11O43248 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC16.57■□□□□ 0.24
HOXC11O43248 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HOXC11O43248 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
HOXC11O43248 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HOXC11O43248 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
HOXC11O43248 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms