Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 GGTLC5P-201ENST00000617623 998 ntBASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 AC016027.1-202ENST00000607927 1699 ntBASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 ARMC10P1-201ENST00000313754 855 ntBASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 AL121772.3-201ENST00000610840 674 ntBASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 PGM5P2-202ENST00000637225 1043 ntBASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 PPT1-215ENST00000641471 2368 ntBASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM49D1C9J1S8 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 MIR3652-201ENST00000579335 131 ntBASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 REXO1L6P-202ENST00000619970 1078 ntBASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 AC107918.4-202ENST00000641623 219 ntBASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms