Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL6A5A8TX70 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL6A5A8TX70 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 FXR1-221ENST00000491674 365 ntTSL 2 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 SDHD-202ENST00000525291 790 ntTSL 3 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 CSH2-206ENST00000560142 749 ntTSL 5 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 AC145423.3-201ENST00000615987 467 ntBASIC12.45□□□□□ -0.42
COL6A5A8TX70 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL6A5A8TX70 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL6A5A8TX70 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL6A5A8TX70 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL6A5A8TX70 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL6A5A8TX70 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL6A5A8TX70 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL6A5A8TX70 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL6A5A8TX70 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL6A5A8TX70 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL6A5A8TX70 SMS-201ENST00000379404 1174 ntTSL 3 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 AC093724.1-201ENST00000448659 1027 ntBASIC12.45□□□□□ -0.42
COL6A5A8TX70 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL6A5A8TX70 RPL18P13-201ENST00000478088 569 ntBASIC12.45□□□□□ -0.42
COL6A5A8TX70 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL6A5A8TX70 IGLV3-15-201ENST00000518356 244 ntBASIC12.45□□□□□ -0.42
COL6A5A8TX70 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL6A5A8TX70 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL6A5A8TX70 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 CDK7-214ENST00000626796 358 ntTSL 5 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL6A5A8TX70 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL6A5A8TX70 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL6A5A8TX70 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL6A5A8TX70 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL6A5A8TX70 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC12.45□□□□□ -0.42
COL6A5A8TX70 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL6A5A8TX70 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL6A5A8TX70 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
COL6A5A8TX70 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL6A5A8TX70 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
COL6A5A8TX70 NEU3-205ENST00000531619 582 ntTSL 5 BASIC12.44□□□□□ -0.42
COL6A5A8TX70 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC12.44□□□□□ -0.42
COL6A5A8TX70 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC12.44□□□□□ -0.42
COL6A5A8TX70 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC12.44□□□□□ -0.42
COL6A5A8TX70 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC12.44□□□□□ -0.42
COL6A5A8TX70 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL6A5A8TX70 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL6A5A8TX70 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL6A5A8TX70 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL6A5A8TX70 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC12.44□□□□□ -0.42
COL6A5A8TX70 AC104581.1-202ENST00000635932 2618 ntBASIC12.44□□□□□ -0.42
COL6A5A8TX70 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
COL6A5A8TX70 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC12.44□□□□□ -0.42
COL6A5A8TX70 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC12.44□□□□□ -0.42
COL6A5A8TX70 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC12.44□□□□□ -0.42
COL6A5A8TX70 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL6A5A8TX70 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC12.44□□□□□ -0.42
COL6A5A8TX70 CEP164P1-201ENST00000455142 418 ntBASIC12.44□□□□□ -0.42
COL6A5A8TX70 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL6A5A8TX70 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC12.44□□□□□ -0.42
COL6A5A8TX70 AL161670.2-201ENST00000557650 1227 ntBASIC12.44□□□□□ -0.42
COL6A5A8TX70 AL022344.2-201ENST00000568976 968 ntBASIC12.44□□□□□ -0.42
COL6A5A8TX70 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC12.44□□□□□ -0.42
COL6A5A8TX70 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC12.44□□□□□ -0.42
COL6A5A8TX70 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL6A5A8TX70 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL6A5A8TX70 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC12.44□□□□□ -0.42
COL6A5A8TX70 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC12.44□□□□□ -0.42
COL6A5A8TX70 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL6A5A8TX70 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL6A5A8TX70 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL6A5A8TX70 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL6A5A8TX70 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC12.44□□□□□ -0.42
COL6A5A8TX70 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
COL6A5A8TX70 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL6A5A8TX70 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL6A5A8TX70 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
COL6A5A8TX70 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL6A5A8TX70 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms