Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 PTMS-202ENST00000389462 773 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 GPS2P2-201ENST00000430745 888 ntBASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 POU5F1P6-201ENST00000466990 990 ntBASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 RPL28-205ENST00000558131 444 ntTSL 5 BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 AL138918.1-201ENST00000568306 659 ntBASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 AP000842.3-202ENST00000569238 1080 ntBASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 AL391005.1-201ENST00000623953 2435 ntBASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 VMO1-203ENST00000416307 712 ntTSL 2 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 SSH2-211ENST00000590153 570 ntTSL 4 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 BANP-204ENST00000393208 2283 ntTSL 2 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 ACE-204ENST00000428043 5120 ntTSL 2 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC18.31■□□□□ 0.52
COL4A3BPQ9Y5P4 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 MIR346-201ENST00000362234 95 ntBASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 HNRNPFP1-201ENST00000391730 1133 ntBASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 RBPMS2P1-201ENST00000437762 623 ntBASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 SLC25A39P2-201ENST00000537614 270 ntBASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 ORC5-208ENST00000626700 344 ntTSL 3 BASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A3BPQ9Y5P4 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms