Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 AC002310.6-201ENST00000624451 1377 ntBASIC14.37□□□□□ -0.11
NKX3-1Q99801 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NKX3-1Q99801 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
NKX3-1Q99801 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 WARS-232ENST00000556645 2508 ntTSL 5 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NKX3-1Q99801 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
NKX3-1Q99801 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
NKX3-1Q99801 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 AC087163.2-201ENST00000457299 853 ntBASIC14.37□□□□□ -0.11
NKX3-1Q99801 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 UNC93B7-201ENST00000509439 705 ntBASIC14.37□□□□□ -0.11
NKX3-1Q99801 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 TPM1-218ENST00000559281 851 ntTSL 5 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 MPDU1-223ENST00000582151 728 ntBASIC14.37□□□□□ -0.11
NKX3-1Q99801 SDCCAG3P1-201ENST00000589292 1150 ntBASIC14.37□□□□□ -0.11
NKX3-1Q99801 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
NKX3-1Q99801 AL139424.1-201ENST00000607572 797 ntBASIC14.37□□□□□ -0.11
NKX3-1Q99801 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 AL022326.1-202ENST00000641533 845 ntBASIC14.37□□□□□ -0.11
NKX3-1Q99801 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NKX3-1Q99801 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NKX3-1Q99801 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NKX3-1Q99801 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NKX3-1Q99801 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX3-1Q99801 SLC22A20-204ENST00000530038 1673 ntBASIC14.36□□□□□ -0.11
NKX3-1Q99801 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NKX3-1Q99801 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX3-1Q99801 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX3-1Q99801 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX3-1Q99801 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX3-1Q99801 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC14.36□□□□□ -0.11
NKX3-1Q99801 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX3-1Q99801 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX3-1Q99801 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX3-1Q99801 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
NKX3-1Q99801 TSPY19P-201ENST00000418461 509 ntBASIC14.36□□□□□ -0.11
NKX3-1Q99801 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC14.36□□□□□ -0.11
NKX3-1Q99801 PMS2P1-201ENST00000431037 1228 ntBASIC14.36□□□□□ -0.11
NKX3-1Q99801 TSPY18P-201ENST00000441642 509 ntBASIC14.36□□□□□ -0.11
NKX3-1Q99801 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX3-1Q99801 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC14.36□□□□□ -0.11
NKX3-1Q99801 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC14.36□□□□□ -0.11
NKX3-1Q99801 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NKX3-1Q99801 SART3-203ENST00000546611 1184 ntBASIC14.36□□□□□ -0.11
NKX3-1Q99801 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC14.36□□□□□ -0.11
NKX3-1Q99801 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC14.36□□□□□ -0.11
NKX3-1Q99801 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC14.36□□□□□ -0.11
NKX3-1Q99801 MTDHP3-201ENST00000594186 672 ntBASIC14.36□□□□□ -0.11
NKX3-1Q99801 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC14.36□□□□□ -0.11
NKX3-1Q99801 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NKX3-1Q99801 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX3-1Q99801 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX3-1Q99801 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.36□□□□□ -0.11
NKX3-1Q99801 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX3-1Q99801 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NKX3-1Q99801 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
NKX3-1Q99801 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
NKX3-1Q99801 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NKX3-1Q99801 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX3-1Q99801 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX3-1Q99801 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
NKX3-1Q99801 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC14.35□□□□□ -0.11
NKX3-1Q99801 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC14.35□□□□□ -0.11
NKX3-1Q99801 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms