Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC14.08□□□□□ -0.16
COL12A1Q99715 CYGB-203ENST00000589145 788 ntTSL 3 BASIC14.08□□□□□ -0.16
COL12A1Q99715 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL12A1Q99715 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL12A1Q99715 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC14.08□□□□□ -0.16
COL12A1Q99715 AC018470.1-201ENST00000624790 3129 ntBASIC14.08□□□□□ -0.16
COL12A1Q99715 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL12A1Q99715 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL12A1Q99715 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL12A1Q99715 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
COL12A1Q99715 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL12A1Q99715 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL12A1Q99715 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL12A1Q99715 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL12A1Q99715 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC14.07□□□□□ -0.16
COL12A1Q99715 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC14.07□□□□□ -0.16
COL12A1Q99715 WDR7-208ENST00000589935 544 ntTSL 4 BASIC14.07□□□□□ -0.16
COL12A1Q99715 FHL2-212ENST00000607522 759 ntTSL 2 BASIC14.07□□□□□ -0.16
COL12A1Q99715 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.07□□□□□ -0.16
COL12A1Q99715 AC091812.3-201ENST00000621362 345 ntBASIC14.07□□□□□ -0.16
COL12A1Q99715 AL158212.4-201ENST00000624062 1286 ntBASIC14.07□□□□□ -0.16
COL12A1Q99715 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL12A1Q99715 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC14.07□□□□□ -0.16
COL12A1Q99715 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL12A1Q99715 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL12A1Q99715 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.07□□□□□ -0.16
COL12A1Q99715 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC14.07□□□□□ -0.16
COL12A1Q99715 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL12A1Q99715 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL12A1Q99715 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL12A1Q99715 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC14.07□□□□□ -0.16
COL12A1Q99715 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC14.07□□□□□ -0.16
COL12A1Q99715 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC14.07□□□□□ -0.16
COL12A1Q99715 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.07□□□□□ -0.16
COL12A1Q99715 HIST3H2BA-201ENST00000436555 524 ntBASIC14.07□□□□□ -0.16
COL12A1Q99715 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL12A1Q99715 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC14.07□□□□□ -0.16
COL12A1Q99715 AL359711.2-201ENST00000563105 872 ntBASIC14.07□□□□□ -0.16
COL12A1Q99715 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC14.07□□□□□ -0.16
COL12A1Q99715 AL133499.1-201ENST00000596207 608 ntBASIC14.07□□□□□ -0.16
COL12A1Q99715 AP000346.4-201ENST00000614827 381 ntBASIC14.07□□□□□ -0.16
COL12A1Q99715 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL12A1Q99715 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL12A1Q99715 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL12A1Q99715 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC14.07□□□□□ -0.16
COL12A1Q99715 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC14.07□□□□□ -0.16
COL12A1Q99715 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC14.07□□□□□ -0.16
COL12A1Q99715 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
COL12A1Q99715 PCDHB17P-201ENST00000539533 2393 ntBASIC14.07□□□□□ -0.16
COL12A1Q99715 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL12A1Q99715 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL12A1Q99715 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL12A1Q99715 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL12A1Q99715 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL12A1Q99715 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL12A1Q99715 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC14.06□□□□□ -0.16
COL12A1Q99715 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC14.06□□□□□ -0.16
COL12A1Q99715 APOA2-204ENST00000464492 530 ntTSL 3 BASIC14.06□□□□□ -0.16
COL12A1Q99715 ATP6V0CP2-201ENST00000469409 207 ntBASIC14.06□□□□□ -0.16
COL12A1Q99715 CFL1-206ENST00000527344 962 ntTSL 2 BASIC14.06□□□□□ -0.16
COL12A1Q99715 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14.06□□□□□ -0.16
COL12A1Q99715 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.06□□□□□ -0.16
COL12A1Q99715 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
COL12A1Q99715 NEFHP1-201ENST00000412845 2629 ntBASIC14.06□□□□□ -0.16
COL12A1Q99715 AC139713.2-201ENST00000641328 2723 ntBASIC14.06□□□□□ -0.16
COL12A1Q99715 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
COL12A1Q99715 AL133373.2-201ENST00000623187 2828 ntBASIC14.06□□□□□ -0.16
COL12A1Q99715 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL12A1Q99715 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC14.06□□□□□ -0.16
COL12A1Q99715 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
COL12A1Q99715 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL12A1Q99715 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL12A1Q99715 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL12A1Q99715 GRN-222ENST00000639447 1314 ntTSL 2 BASIC14.06□□□□□ -0.16
COL12A1Q99715 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.06□□□□□ -0.16
COL12A1Q99715 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC14.06□□□□□ -0.16
COL12A1Q99715 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC14.06□□□□□ -0.16
COL12A1Q99715 RN7SL736P-201ENST00000613111 269 ntBASIC14.06□□□□□ -0.16
COL12A1Q99715 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL12A1Q99715 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL12A1Q99715 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL12A1Q99715 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL12A1Q99715 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
COL12A1Q99715 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL12A1Q99715 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC14.06□□□□□ -0.16
COL12A1Q99715 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC14.06□□□□□ -0.16
COL12A1Q99715 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL12A1Q99715 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
COL12A1Q99715 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
COL12A1Q99715 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.06□□□□□ -0.16
COL12A1Q99715 MIR3147-201ENST00000577811 66 ntBASIC14.06□□□□□ -0.16
COL12A1Q99715 AC073352.2-201ENST00000609385 439 ntBASIC14.06□□□□□ -0.16
COL12A1Q99715 AC005252.2-201ENST00000624630 1141 ntBASIC14.06□□□□□ -0.16
COL12A1Q99715 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL12A1Q99715 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC14.06□□□□□ -0.16
COL12A1Q99715 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC14.05□□□□□ -0.16
COL12A1Q99715 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL12A1Q99715 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC14.05□□□□□ -0.16
COL12A1Q99715 Z97205.2-201ENST00000564697 1639 ntBASIC14.05□□□□□ -0.16
COL12A1Q99715 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms