Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 PCDH8P1-201ENST00000428983 2773 ntBASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 AC105233.2-201ENST00000523697 349 ntBASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 AF228730.5-201ENST00000530288 346 ntBASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 AP000842.3-202ENST00000569238 1080 ntBASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.47■□□□□ 0.07
PTCHD1Q96NR3 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 TSEN15P1-201ENST00000423257 515 ntBASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 METTL21AP1-201ENST00000438852 635 ntBASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTCHD1Q96NR3 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.46■□□□□ 0.06
PTCHD1Q96NR3 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
PTCHD1Q96NR3 LINC01144-201ENST00000626198 1710 ntBASIC15.46■□□□□ 0.06
PTCHD1Q96NR3 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PTCHD1Q96NR3 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
PTCHD1Q96NR3 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTCHD1Q96NR3 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PTCHD1Q96NR3 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTCHD1Q96NR3 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTCHD1Q96NR3 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC15.45■□□□□ 0.06
PTCHD1Q96NR3 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PTCHD1Q96NR3 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTCHD1Q96NR3 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTCHD1Q96NR3 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PTCHD1Q96NR3 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTCHD1Q96NR3 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PTCHD1Q96NR3 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
PTCHD1Q96NR3 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
PTCHD1Q96NR3 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTCHD1Q96NR3 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTCHD1Q96NR3 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PTCHD1Q96NR3 MIR346-201ENST00000362234 95 ntBASIC15.45■□□□□ 0.06
PTCHD1Q96NR3 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC15.45■□□□□ 0.06
PTCHD1Q96NR3 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.45■□□□□ 0.06
PTCHD1Q96NR3 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.45■□□□□ 0.06
PTCHD1Q96NR3 FAM58DP-201ENST00000428076 619 ntBASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms