Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 COPE-202ENST00000349893 948 ntTSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 ATXN2L-201ENST00000325215 3788 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 SPDYE7P-202ENST00000420373 878 ntBASIC5.1□□□□□ -1.59
SYNE1Q8NF91 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 COX5A-202ENST00000562233 441 ntTSL 3 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 AC079140.1-201ENST00000508039 487 ntBASIC5.1□□□□□ -1.59
SYNE1Q8NF91 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 GATD1-206ENST00000526325 756 ntTSL 5 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 PRICKLE1-216ENST00000640132 4278 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 MED16-214ENST00000617672 554 ntTSL 5 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 AC009093.7-201ENST00000623853 1223 ntBASIC5.1□□□□□ -1.59
SYNE1Q8NF91 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 AC108860.2-201ENST00000562760 2183 ntBASIC5.1□□□□□ -1.59
SYNE1Q8NF91 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 SLC25A39P2-201ENST00000537614 270 ntBASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms