Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 ARSEP1-201ENST00000420443 635 ntBASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 ATP5G2P4-201ENST00000442175 420 ntBASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SH3RF1Q7Z6J0 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 LINC02199-201ENST00000506655 2702 ntBASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 TSSK5P-201ENST00000423978 907 ntBASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 AL590560.3-201ENST00000623350 461 ntBASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SH3RF1Q7Z6J0 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.58
SH3RF1Q7Z6J0 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC18.71■□□□□ 0.58
SH3RF1Q7Z6J0 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.58
SH3RF1Q7Z6J0 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 U91328.1-201ENST00000437528 223 ntBASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 AC027369.6-201ENST00000525520 931 ntBASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 AC005412.3-201ENST00000580309 715 ntBASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 COQ4-205ENST00000609948 956 ntTSL 2 BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 AC009118.2-201ENST00000613275 655 ntBASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 AC100757.3-201ENST00000622361 1406 ntBASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC18.7■□□□□ 0.58
SH3RF1Q7Z6J0 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SH3RF1Q7Z6J0 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SH3RF1Q7Z6J0 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms