Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC21.37■■□□□ 1.01
USP54Q70EL1 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC21.37■■□□□ 1.01
USP54Q70EL1 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC21.37■■□□□ 1.01
USP54Q70EL1 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
USP54Q70EL1 AL607033.1-201ENST00000623900 1599 ntBASIC21.37■■□□□ 1.01
USP54Q70EL1 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
USP54Q70EL1 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
USP54Q70EL1 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
USP54Q70EL1 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
USP54Q70EL1 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
USP54Q70EL1 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
USP54Q70EL1 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC21.37■■□□□ 1.01
USP54Q70EL1 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
USP54Q70EL1 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
USP54Q70EL1 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
USP54Q70EL1 RPL7P3-201ENST00000441388 714 ntBASIC21.37■■□□□ 1.01
USP54Q70EL1 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
USP54Q70EL1 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC21.37■■□□□ 1.01
USP54Q70EL1 TDH-203ENST00000531764 1110 ntBASIC21.37■■□□□ 1.01
USP54Q70EL1 CLUHP6-201ENST00000580789 941 ntBASIC21.37■■□□□ 1.01
USP54Q70EL1 AL022328.1-201ENST00000610050 478 ntBASIC21.37■■□□□ 1.01
USP54Q70EL1 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
USP54Q70EL1 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
USP54Q70EL1 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC21.37■■□□□ 1.01
USP54Q70EL1 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
USP54Q70EL1 REXO1L6P-201ENST00000603433 1515 ntBASIC21.36■■□□□ 1.01
USP54Q70EL1 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
USP54Q70EL1 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC21.36■■□□□ 1.01
USP54Q70EL1 MSTO2P-201ENST00000314835 1709 ntBASIC21.36■■□□□ 1.01
USP54Q70EL1 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC21.36■■□□□ 1.01
USP54Q70EL1 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
USP54Q70EL1 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
USP54Q70EL1 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
USP54Q70EL1 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
USP54Q70EL1 AC134915.1-201ENST00000426461 574 ntBASIC21.36■■□□□ 1.01
USP54Q70EL1 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC21.36■■□□□ 1.01
USP54Q70EL1 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC21.36■■□□□ 1.01
USP54Q70EL1 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
USP54Q70EL1 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC21.36■■□□□ 1.01
USP54Q70EL1 PTP4A1P2-201ENST00000546033 454 ntBASIC21.36■■□□□ 1.01
USP54Q70EL1 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
USP54Q70EL1 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC21.36■■□□□ 1.01
USP54Q70EL1 AC244669.2-201ENST00000612320 853 ntBASIC21.36■■□□□ 1.01
USP54Q70EL1 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
USP54Q70EL1 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC21.36■■□□□ 1.01
USP54Q70EL1 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
USP54Q70EL1 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
USP54Q70EL1 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
USP54Q70EL1 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
USP54Q70EL1 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
USP54Q70EL1 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
USP54Q70EL1 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC21.35■■□□□ 1.01
USP54Q70EL1 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC21.35■■□□□ 1.01
USP54Q70EL1 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
USP54Q70EL1 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
USP54Q70EL1 MIR648-201ENST00000385046 94 ntBASIC21.35■■□□□ 1.01
USP54Q70EL1 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC21.35■■□□□ 1.01
USP54Q70EL1 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
USP54Q70EL1 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC21.35■■□□□ 1.01
USP54Q70EL1 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC21.35■■□□□ 1.01
USP54Q70EL1 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC21.35■■□□□ 1.01
USP54Q70EL1 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC21.35■■□□□ 1.01
USP54Q70EL1 EHF-205ENST00000527935 557 ntTSL 2 BASIC21.35■■□□□ 1.01
USP54Q70EL1 AP000812.2-201ENST00000538934 718 ntBASIC21.35■■□□□ 1.01
USP54Q70EL1 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC21.35■■□□□ 1.01
USP54Q70EL1 ATF5-205ENST00000600336 682 ntTSL 2 BASIC21.35■■□□□ 1.01
USP54Q70EL1 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
USP54Q70EL1 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
USP54Q70EL1 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC21.35■■□□□ 1.01
USP54Q70EL1 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC21.35■■□□□ 1.01
USP54Q70EL1 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC21.35■■□□□ 1.01
USP54Q70EL1 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC21.35■■□□□ 1.01
USP54Q70EL1 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
USP54Q70EL1 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
USP54Q70EL1 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
USP54Q70EL1 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
USP54Q70EL1 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
USP54Q70EL1 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
USP54Q70EL1 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC21.34■■□□□ 1.01
USP54Q70EL1 CSF2RBP1-201ENST00000447905 391 ntBASIC21.34■■□□□ 1.01
USP54Q70EL1 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC21.34■■□□□ 1.01
USP54Q70EL1 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
USP54Q70EL1 AP001889.1-201ENST00000525414 633 ntBASIC21.34■■□□□ 1.01
USP54Q70EL1 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC21.34■■□□□ 1.01
USP54Q70EL1 DUX4L45-201ENST00000566406 1057 ntBASIC21.34■■□□□ 1.01
USP54Q70EL1 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
USP54Q70EL1 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
USP54Q70EL1 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
USP54Q70EL1 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
USP54Q70EL1 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
USP54Q70EL1 CYP2AB1P-202ENST00000454440 1456 ntBASIC21.34■■□□□ 1.01
USP54Q70EL1 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC21.34■■□□□ 1.01
USP54Q70EL1 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC21.34■■□□□ 1.01
USP54Q70EL1 AL355864.2-201ENST00000447420 863 ntBASIC21.34■■□□□ 1.01
USP54Q70EL1 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
USP54Q70EL1 FO681548.1-201ENST00000455617 1132 ntBASIC21.34■■□□□ 1.01
USP54Q70EL1 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC21.34■■□□□ 1.01
USP54Q70EL1 AC026410.3-201ENST00000514280 936 ntBASIC21.34■■□□□ 1.01
USP54Q70EL1 RNA5SP412-201ENST00000516234 123 ntBASIC21.34■■□□□ 1.01
USP54Q70EL1 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms