Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 AC140113.2-201ENST00000604370 208 ntBASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 AC093724.1-201ENST00000448659 1027 ntBASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 PDPK2P-202ENST00000562415 1191 ntBASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 AP002472.1-201ENST00000577490 586 ntBASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 AL078644.1-201ENST00000609881 752 ntBASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.27■□□□□ 0.2
ZNF549Q6P9A3 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ZNF549Q6P9A3 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
ZNF549Q6P9A3 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
ZNF549Q6P9A3 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ZNF549Q6P9A3 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ZNF549Q6P9A3 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ZNF549Q6P9A3 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
ZNF549Q6P9A3 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ZNF549Q6P9A3 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.27■□□□□ 0.19
ZNF549Q6P9A3 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.27■□□□□ 0.19
ZNF549Q6P9A3 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.27■□□□□ 0.19
ZNF549Q6P9A3 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ZNF549Q6P9A3 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZNF549Q6P9A3 AC132872.4-202ENST00000622924 2756 ntBASIC16.26■□□□□ 0.19
ZNF549Q6P9A3 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZNF549Q6P9A3 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZNF549Q6P9A3 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.26■□□□□ 0.19
ZNF549Q6P9A3 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZNF549Q6P9A3 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ZNF549Q6P9A3 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZNF549Q6P9A3 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZNF549Q6P9A3 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
ZNF549Q6P9A3 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.26■□□□□ 0.19
ZNF549Q6P9A3 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZNF549Q6P9A3 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZNF549Q6P9A3 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.26■□□□□ 0.19
ZNF549Q6P9A3 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.26■□□□□ 0.19
ZNF549Q6P9A3 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ZNF549Q6P9A3 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
ZNF549Q6P9A3 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZNF549Q6P9A3 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms