Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP39Q53GS9 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP39Q53GS9 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP39Q53GS9 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
USP39Q53GS9 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
USP39Q53GS9 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
USP39Q53GS9 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.64■□□□□ 0.25
USP39Q53GS9 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
USP39Q53GS9 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
USP39Q53GS9 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
USP39Q53GS9 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
USP39Q53GS9 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.64■□□□□ 0.25
USP39Q53GS9 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
USP39Q53GS9 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
USP39Q53GS9 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.64■□□□□ 0.25
USP39Q53GS9 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
USP39Q53GS9 PRYP6-201ENST00000514804 343 ntBASIC16.64■□□□□ 0.25
USP39Q53GS9 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.64■□□□□ 0.25
USP39Q53GS9 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC16.64■□□□□ 0.25
USP39Q53GS9 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.64■□□□□ 0.25
USP39Q53GS9 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.64■□□□□ 0.25
USP39Q53GS9 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.64■□□□□ 0.25
USP39Q53GS9 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC16.64■□□□□ 0.25
USP39Q53GS9 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
USP39Q53GS9 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
USP39Q53GS9 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
USP39Q53GS9 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 AL118508.1-201ENST00000613502 2345 ntBASIC16.64■□□□□ 0.25
USP39Q53GS9 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
USP39Q53GS9 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.64■□□□□ 0.25
USP39Q53GS9 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.64■□□□□ 0.25
USP39Q53GS9 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.64■□□□□ 0.25
USP39Q53GS9 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
USP39Q53GS9 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP39Q53GS9 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
USP39Q53GS9 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP39Q53GS9 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.63■□□□□ 0.25
USP39Q53GS9 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP39Q53GS9 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.63■□□□□ 0.25
USP39Q53GS9 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.63■□□□□ 0.25
USP39Q53GS9 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP39Q53GS9 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USP39Q53GS9 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP39Q53GS9 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP39Q53GS9 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
USP39Q53GS9 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP39Q53GS9 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USP39Q53GS9 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.63■□□□□ 0.25
USP39Q53GS9 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC16.63■□□□□ 0.25
USP39Q53GS9 NAA50-208ENST00000497255 789 ntTSL 5 BASIC16.63■□□□□ 0.25
USP39Q53GS9 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.63■□□□□ 0.25
USP39Q53GS9 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USP39Q53GS9 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC16.63■□□□□ 0.25
USP39Q53GS9 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.63■□□□□ 0.25
USP39Q53GS9 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP39Q53GS9 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.63■□□□□ 0.25
USP39Q53GS9 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.63■□□□□ 0.25
USP39Q53GS9 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP39Q53GS9 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.63■□□□□ 0.25
USP39Q53GS9 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USP39Q53GS9 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USP39Q53GS9 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP39Q53GS9 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USP39Q53GS9 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP39Q53GS9 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
USP39Q53GS9 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
USP39Q53GS9 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP39Q53GS9 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USP39Q53GS9 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP39Q53GS9 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP39Q53GS9 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP39Q53GS9 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USP39Q53GS9 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
USP39Q53GS9 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.63■□□□□ 0.25
USP39Q53GS9 CETN4P-206ENST00000642099 2168 ntBASIC16.62■□□□□ 0.25
USP39Q53GS9 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
USP39Q53GS9 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms