Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 HARS-202ENST00000415192 1401 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 TPO-206ENST00000382269 1155 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 AC245100.5-201ENST00000452108 331 ntBASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC88AQ3V6T2 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC88AQ3V6T2 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC88AQ3V6T2 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC88AQ3V6T2 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC88AQ3V6T2 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC88AQ3V6T2 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC88AQ3V6T2 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CCDC88AQ3V6T2 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC88AQ3V6T2 AC010328.2-201ENST00000597698 1111 ntBASIC19.74■□□□□ 0.75
CCDC88AQ3V6T2 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC88AQ3V6T2 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CCDC88AQ3V6T2 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC88AQ3V6T2 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
CCDC88AQ3V6T2 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC88AQ3V6T2 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC88AQ3V6T2 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CCDC88AQ3V6T2 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
CCDC88AQ3V6T2 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC88AQ3V6T2 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CCDC88AQ3V6T2 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC88AQ3V6T2 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC88AQ3V6T2 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
CCDC88AQ3V6T2 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 AC007969.1-201ENST00000433675 447 ntBASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 RPL13AP20-201ENST00000459725 609 ntBASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 AC036164.1-201ENST00000570544 333 ntBASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 BTNL10-201ENST00000595971 695 ntBASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 AL365330.1-201ENST00000607459 531 ntBASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 RNA5SP423-201ENST00000517127 109 ntBASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC88AQ3V6T2 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 AL136982.4-201ENST00000437689 1740 ntBASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 ELK2AP-201ENST00000392510 1007 ntBASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 AC133539.2-201ENST00000604757 467 ntBASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms