Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 AL009183.1-201ENST00000603760 355 ntBASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 AC026691.1-201ENST00000602502 2017 ntBASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 AC140658.5-201ENST00000438532 169 ntBASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 ACTG1P14-201ENST00000446382 1122 ntBASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 AC109635.5-201ENST00000533593 962 ntBASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 AC027796.2-201ENST00000575326 344 ntBASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
PTCHD3Q3KNS1 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
PTCHD3Q3KNS1 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 AL596257.1-201ENST00000641463 2694 ntBASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms