Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL12P48061 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL12P48061 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.16■□□□□ 0.18
CXCL12P48061 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.16■□□□□ 0.18
CXCL12P48061 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL12P48061 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL12P48061 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CXCL12P48061 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CXCL12P48061 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.15■□□□□ 0.18
CXCL12P48061 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CXCL12P48061 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.15■□□□□ 0.18
CXCL12P48061 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CXCL12P48061 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CXCL12P48061 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CXCL12P48061 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.15■□□□□ 0.18
CXCL12P48061 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CXCL12P48061 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CXCL12P48061 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CXCL12P48061 GZMB-202ENST00000382540 816 ntTSL 5 BASIC16.15■□□□□ 0.18
CXCL12P48061 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CXCL12P48061 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CXCL12P48061 USB1-202ENST00000423271 1217 ntTSL 2 BASIC16.15■□□□□ 0.18
CXCL12P48061 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC16.15■□□□□ 0.18
CXCL12P48061 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC16.15■□□□□ 0.18
CXCL12P48061 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC16.15■□□□□ 0.18
CXCL12P48061 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC16.15■□□□□ 0.18
CXCL12P48061 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC16.15■□□□□ 0.18
CXCL12P48061 RPL7P3-201ENST00000441388 714 ntBASIC16.15■□□□□ 0.18
CXCL12P48061 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CXCL12P48061 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CXCL12P48061 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.15■□□□□ 0.18
CXCL12P48061 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CXCL12P48061 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC16.15■□□□□ 0.18
CXCL12P48061 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.15■□□□□ 0.18
CXCL12P48061 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC16.15■□□□□ 0.18
CXCL12P48061 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CXCL12P48061 LINC01115-203ENST00000606068 577 ntBASIC16.15■□□□□ 0.18
CXCL12P48061 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.15■□□□□ 0.18
CXCL12P48061 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.15■□□□□ 0.18
CXCL12P48061 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC16.15■□□□□ 0.18
CXCL12P48061 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CXCL12P48061 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
CXCL12P48061 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CXCL12P48061 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.15■□□□□ 0.18
CXCL12P48061 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.18
CXCL12P48061 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CXCL12P48061 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.14■□□□□ 0.17
CXCL12P48061 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
CXCL12P48061 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.14■□□□□ 0.17
CXCL12P48061 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CXCL12P48061 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
CXCL12P48061 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
CXCL12P48061 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CXCL12P48061 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC16.14■□□□□ 0.17
CXCL12P48061 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CXCL12P48061 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC16.14■□□□□ 0.17
CXCL12P48061 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CXCL12P48061 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CXCL12P48061 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CXCL12P48061 AC005229.1-201ENST00000392885 409 ntBASIC16.14■□□□□ 0.17
CXCL12P48061 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC16.14■□□□□ 0.17
CXCL12P48061 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC16.14■□□□□ 0.17
CXCL12P48061 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC16.14■□□□□ 0.17
CXCL12P48061 PARP8-218ENST00000513738 596 ntTSL 4 BASIC16.14■□□□□ 0.17
CXCL12P48061 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CXCL12P48061 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC16.14■□□□□ 0.17
CXCL12P48061 ENPP7P5-201ENST00000541031 1031 ntBASIC16.14■□□□□ 0.17
CXCL12P48061 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.14■□□□□ 0.17
CXCL12P48061 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC16.14■□□□□ 0.17
CXCL12P48061 PTP4A1P2-201ENST00000546033 454 ntBASIC16.14■□□□□ 0.17
CXCL12P48061 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC16.14■□□□□ 0.17
CXCL12P48061 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC16.14■□□□□ 0.17
CXCL12P48061 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CXCL12P48061 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.14■□□□□ 0.17
CXCL12P48061 AL391069.4-201ENST00000609583 481 ntBASIC16.14■□□□□ 0.17
CXCL12P48061 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.14■□□□□ 0.17
CXCL12P48061 AL158212.4-201ENST00000624062 1286 ntBASIC16.14■□□□□ 0.17
CXCL12P48061 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CXCL12P48061 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.14■□□□□ 0.17
CXCL12P48061 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
CXCL12P48061 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.14■□□□□ 0.17
CXCL12P48061 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CXCL12P48061 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.17
CXCL12P48061 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC16.14■□□□□ 0.17
CXCL12P48061 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CXCL12P48061 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.14■□□□□ 0.17
CXCL12P48061 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CXCL12P48061 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CXCL12P48061 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
CXCL12P48061 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CXCL12P48061 AL645728.1-201ENST00000366221 2101 ntBASIC16.13■□□□□ 0.17
CXCL12P48061 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
CXCL12P48061 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CXCL12P48061 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CXCL12P48061 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CXCL12P48061 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CXCL12P48061 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CXCL12P48061 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CXCL12P48061 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CXCL12P48061 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms