Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL18A1P39060 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL18A1P39060 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC21.17■□□□□ 0.98
COL18A1P39060 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC21.17■□□□□ 0.98
COL18A1P39060 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC21.17■□□□□ 0.98
COL18A1P39060 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC21.17■□□□□ 0.98
COL18A1P39060 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
COL18A1P39060 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
COL18A1P39060 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC21.17■□□□□ 0.98
COL18A1P39060 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC21.17■□□□□ 0.98
COL18A1P39060 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC21.17■□□□□ 0.98
COL18A1P39060 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC21.17■□□□□ 0.98
COL18A1P39060 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC21.17■□□□□ 0.98
COL18A1P39060 AC079316.1-201ENST00000548397 411 ntBASIC21.17■□□□□ 0.98
COL18A1P39060 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC21.17■□□□□ 0.98
COL18A1P39060 METTL26-214ENST00000614890 801 ntTSL 3 BASIC21.17■□□□□ 0.98
COL18A1P39060 ABBA01031663.1-201ENST00000635630 790 ntBASIC21.17■□□□□ 0.98
COL18A1P39060 HADH-212ENST00000638621 741 ntTSL 5 BASIC21.17■□□□□ 0.98
COL18A1P39060 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL18A1P39060 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
COL18A1P39060 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL18A1P39060 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL18A1P39060 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL18A1P39060 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL18A1P39060 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC21.17■□□□□ 0.98
COL18A1P39060 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
COL18A1P39060 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL18A1P39060 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL18A1P39060 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
COL18A1P39060 ZBTB12BP-201ENST00000314232 1122 ntBASIC21.16■□□□□ 0.98
COL18A1P39060 HAUS4P1-201ENST00000406739 1145 ntBASIC21.16■□□□□ 0.98
COL18A1P39060 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC21.16■□□□□ 0.98
COL18A1P39060 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC21.16■□□□□ 0.98
COL18A1P39060 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
COL18A1P39060 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC21.16■□□□□ 0.98
COL18A1P39060 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC21.16■□□□□ 0.98
COL18A1P39060 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL18A1P39060 MIR3615-201ENST00000581999 87 ntBASIC21.16■□□□□ 0.98
COL18A1P39060 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC21.16■□□□□ 0.98
COL18A1P39060 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL18A1P39060 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC21.16■□□□□ 0.98
COL18A1P39060 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
COL18A1P39060 RNF216P1-203ENST00000404404 2427 ntBASIC21.16■□□□□ 0.98
COL18A1P39060 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
COL18A1P39060 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC21.16■□□□□ 0.98
COL18A1P39060 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL18A1P39060 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC21.16■□□□□ 0.98
COL18A1P39060 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
COL18A1P39060 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL18A1P39060 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL18A1P39060 NF2-208ENST00000403435 2568 ntTSL 5 BASIC21.16■□□□□ 0.98
COL18A1P39060 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL18A1P39060 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC21.16■□□□□ 0.98
COL18A1P39060 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
COL18A1P39060 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL18A1P39060 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL18A1P39060 NME6-203ENST00000415644 849 ntTSL 2 BASIC21.15■□□□□ 0.98
COL18A1P39060 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC21.15■□□□□ 0.98
COL18A1P39060 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC21.15■□□□□ 0.98
COL18A1P39060 KRT18P43-201ENST00000469825 1281 ntBASIC21.15■□□□□ 0.98
COL18A1P39060 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL18A1P39060 AC010328.2-201ENST00000597698 1111 ntBASIC21.15■□□□□ 0.98
COL18A1P39060 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL18A1P39060 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC21.15■□□□□ 0.98
COL18A1P39060 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC21.15■□□□□ 0.98
COL18A1P39060 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC21.15■□□□□ 0.98
COL18A1P39060 AC134312.5-201ENST00000568031 1313 ntBASIC21.15■□□□□ 0.98
COL18A1P39060 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL18A1P39060 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL18A1P39060 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL18A1P39060 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC21.15■□□□□ 0.98
COL18A1P39060 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL18A1P39060 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC21.15■□□□□ 0.98
COL18A1P39060 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL18A1P39060 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL18A1P39060 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL18A1P39060 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL18A1P39060 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC21.15■□□□□ 0.98
COL18A1P39060 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC21.15■□□□□ 0.98
COL18A1P39060 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC21.15■□□□□ 0.98
COL18A1P39060 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC21.15■□□□□ 0.98
COL18A1P39060 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC21.15■□□□□ 0.98
COL18A1P39060 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC21.15■□□□□ 0.98
COL18A1P39060 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
COL18A1P39060 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC21.14■□□□□ 0.98
COL18A1P39060 TP73-209ENST00000603362 1668 ntTSL 5 BASIC21.14■□□□□ 0.98
COL18A1P39060 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
COL18A1P39060 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL18A1P39060 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL18A1P39060 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC21.14■□□□□ 0.97
COL18A1P39060 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL18A1P39060 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL18A1P39060 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC21.14■□□□□ 0.97
COL18A1P39060 YBX1P6-201ENST00000442962 1002 ntBASIC21.14■□□□□ 0.97
COL18A1P39060 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC21.14■□□□□ 0.97
COL18A1P39060 AC026410.3-201ENST00000514280 936 ntBASIC21.14■□□□□ 0.97
COL18A1P39060 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC21.14■□□□□ 0.97
COL18A1P39060 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC21.14■□□□□ 0.97
COL18A1P39060 AC015910.1-201ENST00000579400 975 ntBASIC21.14■□□□□ 0.97
COL18A1P39060 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms