Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SHMT2P34897 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
SHMT2P34897 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.09■□□□□ 0.17
SHMT2P34897 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SHMT2P34897 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHMT2P34897 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SHMT2P34897 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.09■□□□□ 0.17
SHMT2P34897 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.09■□□□□ 0.17
SHMT2P34897 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.09■□□□□ 0.17
SHMT2P34897 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.09■□□□□ 0.17
SHMT2P34897 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SHMT2P34897 SNHG9-202ENST00000564014 471 ntBASIC16.09■□□□□ 0.17
SHMT2P34897 AL513210.1-201ENST00000629608 234 ntBASIC16.09■□□□□ 0.17
SHMT2P34897 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.09■□□□□ 0.17
SHMT2P34897 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SHMT2P34897 CROCCP1-201ENST00000426910 5675 ntBASIC16.09■□□□□ 0.17
SHMT2P34897 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
SHMT2P34897 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.09■□□□□ 0.17
SHMT2P34897 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHMT2P34897 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SHMT2P34897 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHMT2P34897 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SHMT2P34897 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SHMT2P34897 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.09■□□□□ 0.17
SHMT2P34897 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHMT2P34897 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHMT2P34897 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHMT2P34897 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
SHMT2P34897 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
SHMT2P34897 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.09■□□□□ 0.17
SHMT2P34897 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SHMT2P34897 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHMT2P34897 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SHMT2P34897 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SHMT2P34897 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.09■□□□□ 0.17
SHMT2P34897 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.09■□□□□ 0.17
SHMT2P34897 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
SHMT2P34897 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
SHMT2P34897 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
SHMT2P34897 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.08■□□□□ 0.17
SHMT2P34897 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SHMT2P34897 AL512652.2-201ENST00000625156 1716 ntBASIC16.08■□□□□ 0.17
SHMT2P34897 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
SHMT2P34897 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
SHMT2P34897 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
SHMT2P34897 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
SHMT2P34897 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHMT2P34897 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHMT2P34897 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SHMT2P34897 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHMT2P34897 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SHMT2P34897 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SHMT2P34897 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.08■□□□□ 0.16
SHMT2P34897 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.08■□□□□ 0.16
SHMT2P34897 RPS8P6-201ENST00000426177 609 ntBASIC16.08■□□□□ 0.16
SHMT2P34897 DNAJB3-202ENST00000449667 1266 ntBASIC16.08■□□□□ 0.16
SHMT2P34897 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.08■□□□□ 0.16
SHMT2P34897 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.08■□□□□ 0.16
SHMT2P34897 AC020765.3-201ENST00000613051 740 ntBASIC16.08■□□□□ 0.16
SHMT2P34897 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.08■□□□□ 0.16
SHMT2P34897 AC105339.1-204ENST00000636249 355 ntBASIC16.08■□□□□ 0.16
SHMT2P34897 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.16
SHMT2P34897 AC024909.3-201ENST00000611513 2257 ntBASIC16.08■□□□□ 0.16
SHMT2P34897 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.08■□□□□ 0.16
SHMT2P34897 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.08■□□□□ 0.16
SHMT2P34897 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SHMT2P34897 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.08■□□□□ 0.16
SHMT2P34897 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SHMT2P34897 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHMT2P34897 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.08■□□□□ 0.16
SHMT2P34897 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHMT2P34897 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
SHMT2P34897 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHMT2P34897 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.07■□□□□ 0.16
SHMT2P34897 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SHMT2P34897 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
SHMT2P34897 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.07■□□□□ 0.16
SHMT2P34897 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SHMT2P34897 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHMT2P34897 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHMT2P34897 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
SHMT2P34897 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHMT2P34897 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SHMT2P34897 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.07■□□□□ 0.16
SHMT2P34897 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHMT2P34897 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHMT2P34897 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
SHMT2P34897 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.07■□□□□ 0.16
SHMT2P34897 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.07■□□□□ 0.16
SHMT2P34897 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.07■□□□□ 0.16
SHMT2P34897 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.07■□□□□ 0.16
SHMT2P34897 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHMT2P34897 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
SHMT2P34897 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16.07■□□□□ 0.16
SHMT2P34897 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
SHMT2P34897 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.07■□□□□ 0.16
SHMT2P34897 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.07■□□□□ 0.16
SHMT2P34897 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
SHMT2P34897 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
SHMT2P34897 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms