Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
SMARCA1P28370 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCA1P28370 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCA1P28370 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.71■□□□□ 0.59
SMARCA1P28370 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCA1P28370 AP001282.1-201ENST00000531301 1499 ntBASIC18.71■□□□□ 0.59
SMARCA1P28370 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC18.71■□□□□ 0.59
SMARCA1P28370 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCA1P28370 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.58
SMARCA1P28370 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC18.71■□□□□ 0.58
SMARCA1P28370 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCA1P28370 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC18.7■□□□□ 0.58
SMARCA1P28370 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC18.7■□□□□ 0.58
SMARCA1P28370 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCA1P28370 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCA1P28370 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCA1P28370 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCA1P28370 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC18.7■□□□□ 0.58
SMARCA1P28370 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
SMARCA1P28370 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC18.7■□□□□ 0.58
SMARCA1P28370 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC18.7■□□□□ 0.58
SMARCA1P28370 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCA1P28370 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.7■□□□□ 0.58
SMARCA1P28370 RPS19-201ENST00000221975 500 ntTSL 3 BASIC18.7■□□□□ 0.58
SMARCA1P28370 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCA1P28370 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCA1P28370 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCA1P28370 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
SMARCA1P28370 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC18.7■□□□□ 0.58
SMARCA1P28370 AC055876.3-201ENST00000431496 288 ntBASIC18.7■□□□□ 0.58
SMARCA1P28370 AC097493.3-201ENST00000509725 367 ntBASIC18.7■□□□□ 0.58
SMARCA1P28370 LY6E-204ENST00000519546 971 ntTSL 2 BASIC18.7■□□□□ 0.58
SMARCA1P28370 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCA1P28370 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC18.7■□□□□ 0.58
SMARCA1P28370 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCA1P28370 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
SMARCA1P28370 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC18.7■□□□□ 0.58
SMARCA1P28370 AC138649.4-201ENST00000612222 287 ntBASIC18.7■□□□□ 0.58
SMARCA1P28370 AC093512.1-201ENST00000617969 520 ntBASIC18.7■□□□□ 0.58
SMARCA1P28370 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
SMARCA1P28370 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCA1P28370 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCA1P28370 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCA1P28370 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCA1P28370 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCA1P28370 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
SMARCA1P28370 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
SMARCA1P28370 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC18.69■□□□□ 0.58
SMARCA1P28370 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
SMARCA1P28370 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC18.69■□□□□ 0.58
SMARCA1P28370 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCA1P28370 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCA1P28370 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCA1P28370 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
SMARCA1P28370 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
SMARCA1P28370 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
SMARCA1P28370 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCA1P28370 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCA1P28370 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCA1P28370 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
SMARCA1P28370 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCA1P28370 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCA1P28370 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCA1P28370 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC18.69■□□□□ 0.58
SMARCA1P28370 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC18.69■□□□□ 0.58
SMARCA1P28370 AC092580.3-201ENST00000430932 139 ntBASIC18.69■□□□□ 0.58
SMARCA1P28370 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCA1P28370 EEF1DP4-201ENST00000446006 880 ntBASIC18.69■□□□□ 0.58
SMARCA1P28370 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCA1P28370 AL079307.3-201ENST00000556114 283 ntBASIC18.69■□□□□ 0.58
SMARCA1P28370 AC243562.2-201ENST00000561247 970 ntBASIC18.69■□□□□ 0.58
SMARCA1P28370 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC18.69■□□□□ 0.58
SMARCA1P28370 AC106028.4-201ENST00000614509 607 ntBASIC18.69■□□□□ 0.58
SMARCA1P28370 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
SMARCA1P28370 AC073592.8-201ENST00000624126 511 ntBASIC18.69■□□□□ 0.58
SMARCA1P28370 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCA1P28370 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCA1P28370 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCA1P28370 CETN4P-206ENST00000642099 2168 ntBASIC18.69■□□□□ 0.58
SMARCA1P28370 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCA1P28370 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCA1P28370 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCA1P28370 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCA1P28370 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCA1P28370 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.69■□□□□ 0.58
SMARCA1P28370 AC084018.2-201ENST00000613093 2607 ntBASIC18.69■□□□□ 0.58
SMARCA1P28370 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
SMARCA1P28370 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.68■□□□□ 0.58
SMARCA1P28370 KRT8P12-202ENST00000472924 1397 ntBASIC18.68■□□□□ 0.58
SMARCA1P28370 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCA1P28370 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCA1P28370 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
SMARCA1P28370 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC18.68■□□□□ 0.58
SMARCA1P28370 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCA1P28370 SP100-205ENST00000409824 1802 ntTSL 5 BASIC18.68■□□□□ 0.58
SMARCA1P28370 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCA1P28370 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
SMARCA1P28370 MIR943-201ENST00000401286 94 ntBASIC18.68■□□□□ 0.58
SMARCA1P28370 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC18.68■□□□□ 0.58
SMARCA1P28370 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms